Evidence map›Paper›PMID 33128871›Full record

ArticleMolecular cell2020

3D Culture Models with CRISPR Screens Reveal Hyperactive NRF2 as a Prerequisite for Spheroid Formation via Regulation of Proliferation and Ferroptosis.

Nobuaki Takahashi, Patricia Cho, Laura M Selfors, Hendrik J Kuiken, Roma Kaul, Takuro Fujiwara, Isaac S Harris, Tian Zhang, Steven P Gygi, Joan S Brugge

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 196 citations in OpenAlex.

  1. Ferroptosis in cancer: molecular mechanisms, biological roles, and therapeutic significance.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
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  17. Activating NRF2Cancer gene therapy · 2025
    Article
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64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Nobuaki TakahashiDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Ludwig Cancer Center, Boston, MA 02115, USA. Electronic address: takahashi@sbchem.kyoto-u.ac.jp.
Patricia ChoDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Ludwig Cancer Center, Boston, MA 02115, USA.
Laura M SelforsDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Ludwig Cancer Center, Boston, MA 02115, USA.
Hendrik J KuikenDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Ludwig Cancer Center, Boston, MA 02115, USA.
Roma KaulDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Ludwig Cancer Center, Boston, MA 02115, USA.
Takuro FujiwaraDepartment of Synthetic Chemistry and Biological Chemistry, Kyoto University, Kyoto 615-8510, Japan.
Isaac S HarrisDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Ludwig Cancer Center, Boston, MA 02115, USA.
Tian ZhangDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.
Steven P GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.
Joan S BruggeDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Ludwig Cancer Center, Boston, MA 02115, USA. Electronic address: joan_brugge@hms.harvard.edu.
Harvard University · USKyoto University · JP

Funding

New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
NIGMS NIH HHS R01 GM067945
6 · The paper itself

Abstract

Cancer-associated mutations that stabilize NRF2, an oxidant defense transcription factor, are predicted to promote tumor development. Here, utilizing 3D cancer spheroid models coupled with CRISPR-Cas9 screens, we investigate the molecular pathogenesis mediated by NRF2 hyperactivation. NRF2 hyperactivation was necessary for proliferation and survival in lung tumor spheroids. Antioxidant treatment rescued survival but not proliferation, suggesting the presence of distinct mechanisms. CRISPR screens revealed that spheroids are differentially dependent on the mammalian target of rapamycin (mTOR) for proliferation and the lipid peroxidase GPX4 for protection from ferroptosis of inner, matrix-deprived cells. Ferroptosis inhibitors blocked death from NRF2 downregulation, demonstrating a critical role of NRF2 in protecting matrix-deprived cells from ferroptosis. Interestingly, proteomics analyses show global enrichment of selenoproteins, including GPX4, by NRF2 downregulation, and targeting NRF2 and GPX4 killed spheroids overall. These results illustrate the value of spheroid culture in revealing environmental or spatial differential dependencies on NRF2 and reveal exploitable vulnerabilities of NRF2-hyperactivated tumors.

Indexed as

Cell Culture TechniquesCell ProliferationCRISPR-Cas SystemsFerroptosisA549 CellsHumansNeoplasm ProteinsNeoplasmsNF-E2-Related Factor 2Phospholipid Hydroperoxide Glutathione PeroxidaseSpheroids, CellularTOR Serine-Threonine KinasesMTOR protein, humanNeoplasm ProteinsNFE2L2 protein, humanNF-E2-Related Factor 2Phospholipid Hydroperoxide Glutathione PeroxidaseTOR Serine-Threonine Kinasesoxidative stress, cancer, cell death, ferroptosis, 3D culture, NRF2, CRISPR screening, selenoprotein, GPX4

Identifiers

PMID33128871
PMCPMC7718371
OpenAlexW3096650868

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.