Evidence map›Paper›PMID 33128114›Full record

ArticleThe protein journal2020

Studying the Role of a Single Mutation of a Family 11 Glycoside Hydrolase Using High-Resolution X-ray Crystallography.

Zhihong Li, Xiaoshuai Zhang, Chunran Li, Andrey Kovalevsky, Qun Wan

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in The protein journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Zhihong LiCollege of Science, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Xiaoshuai ZhangCollege of Science, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Chunran LiCollege of Science, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Andrey KovalevskyNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Qun WanCollege of Science, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China. qunwan@njau.edu.cn.ORCID 0000-0002-8309-0341
Nanjing Agricultural University · CNOak Ridge National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

XynII is a family 11 glycoside hydrolase that uses the retaining mechanism for catalysis. In the active site, E177 works as the acid/base and E86 works as the nucleophile. Mutating an uncharged residue (N44) to an acidic residue (D) near E177 decreases the enzyme's optimal pH by ~ 1.0 unit. D44 was previously suggested to be a second proton carrier for catalysis. To test this hypothesis, we abolished the activity of E177 by mutating it to be Q, and mutated N44 to be D or E. These double mutants have dramatically decreased activities. Our high-resolution crystallographic structures and the microscopic pK

Indexed as

Mutation, MissenseCrystallography, X-RayFungal ProteinsGlycoside HydrolasesHypocrealesProtein DomainsFungal ProteinsGlycoside HydrolasesElectrostaticsGeneral acid/base catalysisGlycoside hydrolaseMutagenesispH-dependent activityX-ray crystallography

Identifiers

PMID33128114
OpenAlexW3095996117

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.