Evidence map›Paper›PMID 33127644›Full record

ArticleThe Journal of biological chemistry2020

The structure of a family 110 glycoside hydrolase provides insight into the hydrolysis of α-1,3-galactosidic linkages in λ-carrageenan and blood group antigens.

Bailey E McGuire, Andrew G Hettle, Chelsea Vickers, Dustin T King, David J Vocadlo, Alisdair B Boraston

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Crystal Structure ofJournal of applied glycoscience · 2024
    Article
  5. Three novel marine species of the genusFrontiers in microbiology · 2023
    Article
  6. Toward Understanding the Alginate Catabolism inFrontiers in bioengineering and biotechnology · 2022
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Bailey E McGuireDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.
Andrew G HettleDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.
Chelsea VickersDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.
Dustin T KingDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
David J VocadloDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada; Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
Alisdair B BorastonDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada. Electronic address: boraston@uvic.ca.
University of Victoria · CASimon Fraser University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

α-Linked galactose is a common carbohydrate motif in nature that is processed by a variety of glycoside hydrolases from different families. Terminal Galα1-3Gal motifs are found as a defining feature of different blood group and tissue antigens, as well as the building block of the marine algal galactan λ-carrageenan. The blood group B antigen and linear α-Gal epitope can be processed by glycoside hydrolases in family GH110, whereas the presence of genes encoding GH110 enzymes in polysaccharide utilization loci from marine bacteria suggests a role in processing λ-carrageenan. However, the structure-function relationships underpinning the α-1,3-galactosidase activity within family GH110 remain unknown. Here we focus on a GH110 enzyme (PdGH110B) from the carrageenolytic marine bacterium

Indexed as

Blood Group AntigensCarrageenanCatalytic DomainCrystallography, X-RayGalactosidesGlycoside HydrolasesHydrolysisModels, MolecularPhylogenyProtein ConformationPseudoalteromonasSubstrate SpecificityBlood Group AntigensCarrageenanGalactosidesGlycoside Hydrolasesblood group antigencarrageenanenzyme structuregalactosegalactosidaseglycoside hydrolasePseudoalteromonasstructural biologyX-ray crystallographyX-ray crystal structure

Identifiers

PMID33127644
PMCPMC7939477
OpenAlexW3097354331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.