Evidence map›Paper›PMID 33124980›Full record

ArticleeLife2020

Transcription termination and antitermination of bacterial CRISPR arrays.

Anne M Stringer, Gabriele Baniulyte, Erica Lasek-Nesselquist, Kimberley D Seed, Joseph T Wade

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Identification of PAM Requirements for thebioRxiv : the preprint server for biology · 2025
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  8. A scalable framework for the discovery of functional helicase substrates and helicase-driven regulatory switches.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Anne M StringerWadsworth Center, New York State Department of Health, Albany, United States.
Gabriele BaniulyteDepartment of Biomedical Sciences, School of Public Health, University at Albany, Albany, United States.ORCID 0000-0003-0235-7938
Erica Lasek-NesselquistWadsworth Center, New York State Department of Health, Albany, United States.
Kimberley D SeedDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-0139-1600
Joseph T WadeWadsworth Center, New York State Department of Health, Albany, United States.ORCID 0000-0002-9779-3160
New York State Department of Health · USChan Zuckerberg Initiative (United States) · USUniversity at Albany, State University of New York · US

Funding

Phage resistance and mobile genetic elements in Vibrio choleraeR01AI127652 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SEED, KIMBERLEY DIANE · 2016 to 2025
$4.6M
The Escherichia coli Type I-E CRISPR-Cas immunity systemR01GM122836 · NIGMS · WADSWORTH CENTER · PI WADE, JOSEPH THOMAS · 2018 to 2021
$1.5M
High-throughput application of CRISPR technology to identify gene function in SalmonellaR21AI126416 · NIAID · WADSWORTH CENTER · PI WADE, JOSEPH THOMAS · 2016 to 2017
$443k
NIAID NIH HHS R01 AI127652NIAID NIH HHS R21 AI126416NIGMS NIH HHS R01 GM122836
6 · The paper itself

Abstract

A hallmark of CRISPR-Cas immunity systems is the CRISPR array, a genomic locus consisting of short, repeated sequences ('repeats') interspersed with short, variable sequences ('spacers'). CRISPR arrays are transcribed and processed into individual CRISPR RNAs that each include a single spacer, and direct Cas proteins to complementary sequences in invading nucleic acid. Most bacterial CRISPR array transcripts are unusually long for untranslated RNA, suggesting the existence of mechanisms to prevent premature transcription termination by Rho, a conserved bacterial transcription termination factor that rapidly terminates untranslated RNA. We show that Rho can prematurely terminate transcription of bacterial CRISPR arrays, and we identify a widespread antitermination mechanism that antagonizes Rho to facilitate complete transcription of CRISPR arrays. Thus, our data highlight the importance of transcription termination and antitermination in the evolution of bacterial CRISPR-Cas systems.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsTranscription Termination, GeneticBacteriaBacterial ProteinsCodon, TerminatorRNA, BacterialBacterial ProteinsCodon, TerminatorRNA, BacterialAntiterminationCRISPRgeneticsgenomicsinfectious diseasemicrobiologyRho termination

Identifiers

PMID33124980
PMCPMC7665894
OpenAlexW3096813061

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.