ReviewZoological research2020
Reconstructing gene regulatory networks in single-cell transcriptomic data analysis.
Review in Zoological research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
14 citing papers in PubMed.
- FERRET: Framework to Evaluate Robustness in Regulatory Networks Using Heterogeneous Cell Types.bioRxiv : the preprint server for biology · 2026Article
- Analysis of the role of RNA regulatory networks in cancer treatment: Mechanisms, applications and future prospects (Review).Molecular and clinical oncology · 2025Review
- scRDEN: single-cell dynamic gene rank differential expression network and robust trajectory inference.Scientific reports · 2025Article
- Identification of Critical States in Complex Biological Systems Using Cell-Specific Causal Network Entropy.Research (Washington, D.C.) · 2025Article
- Integration of multi-omics profiling reveals an epigenetic-based molecular classification of lung adenocarcinoma: implications for drug sensitivity and immunotherapy response prediction.Frontiers in pharmacology · 2025Article
- WCSGNet: a graph neural network approach using weighted cell-specific networks for cell-type annotation in scRNA-seq.Frontiers in genetics · 2025Article
- Advances in computational and experimental approaches for deciphering transcriptional regulatory networks: Understanding the roles of cis-regulatory elements is essential, and recent research utilizing MPRAs, STARR-seq, CRISPR-Cas9, and machine learning has yielded valuable insights.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024Review
- Spatially resolved transcriptomic profiling of placental development in dairy cow.Zoological research · 2024Article
- Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods.Bioinformatics and biology insights · 2024Review
- Cell atlas of CClZoological research · 2023Article
- Coevolutionary insights between promoters and transcription factors in the plant and animal kingdoms.Zoological research · 2022Article
- Inference of Molecular Regulatory Systems Using Statistical Path-Consistency Algorithm.Entropy (Basel, Switzerland) · 2022Article
- Single-cell entropy network detects the activity of immune cells based on ribosomal protein genes.Computational and structural biotechnology journal · 2022Article
- Intracellular and Intercellular Gene Regulatory Network Inference From Time-Course Individual RNA-Seq.Frontiers in bioinformatics · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Gene regulatory networks play pivotal roles in our understanding of biological processes/mechanisms at the molecular level. Many studies have developed sample-specific or cell-type-specific gene regulatory networks from single-cell transcriptomic data based on a large amount of cell samples. Here, we review the state-of-the-art computational algorithms and describe various applications of gene regulatory networks in biological studies.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.