RNA-Seq analysis of genes affected by Cyclophilin A/DIAGEOTROPICA (DGT) in tomato root development.

Maria G Ivanchenko, Olivia R Ozguc, Stephanie R Bollmann, Valerie N Fraser, Molly Megraw

Open access · goldAbstract read

In one paragraph

Article in F1000Research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it

0cells of the map it votes in

0citing papers in PubMed

0.3field-weighted citation impact, top 45% of its field

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Maria G Ivanchenko *Department of Botany and Plant Pathology, Oregon State University, 2701 SW Campus Way, Corvallis, Oregon, 97331, USA.

Olivia R Ozguc *Biochemistry and Molecular Biology Program, Oregon State University, 2701 SW Campus Way, Corvallis, Oregon, 97331, USA.ORCID 0000-0001-5826-5819

Stephanie R BollmannCenter for Genome Research & Biocomputing, Oregon State University, 2750 SW Campus Way, Corvallis, Oregon, 97331, USA.

Valerie N FraserDepartment of Botany and Plant Pathology, Oregon State University, 2701 SW Campus Way, Corvallis, Oregon, 97331, USA.ORCID 0000-0003-1422-5289

Molly MegrawDepartment of Botany and Plant Pathology, Oregon State University, 2701 SW Campus Way, Corvallis, Oregon, 97331, USA.

Oregon State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclophilin A/DIAGEOTROPICA (DGT) has been linked to auxin-regulated development in tomato and appears to affect multiple developmental pathways. Loss of DGT function results in a pleiotropic phenotype that is strongest in the roots, including shortened roots with no lateral branching. Here, we present an RNA-Seq dataset comparing the gene expression profiles of wildtype ('Ailsa Craig') and

Indexed as

Solanum lycopersicumCyclophilin AIndoleacetic AcidsPlant RootsRNA-SeqCyclophilin AIndoleacetic AcidsDevelopmentDGTDiageotropicaGene expressionRNA-SeqRootTomato

Identifiers

PMID33123350

DOI10.12688/f1000research.25750.1

PMCPMC7570327

OpenAlexW3087986675

What OpenQuestion holds

Textmetadata

LicenceCC BY

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.