Evidence map›Paper›PMID 33122003›Full record

ArticleJournal of molecular biology2020

The Structures of SctK and SctD from Pseudomonas aeruginosa Reveal the Interface of the Type III Secretion System Basal Body and Sorting Platform.

Meenakumari Muthuramalingam, Sean K Whittier, Scott Lovell, Kevin P Battaile, Shoichi Tachiyama, David K Johnson, Wendy L Picking, William D Picking

Abstract read
In one paragraph

Article in Journal of molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. A truncated mutation of MucA inActa biochimica et biophysica Sinica · 2022
    Article
  11. Article
  12. TheMicroorganisms · 2021
    Review
  13. Composition and Biophysical Properties of the Sorting Platform Pods in theFrontiers in cellular and infection microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Meenakumari MuthuramalingamDepartment of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS 66047, United States.
Sean K WhittierDepartment of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS 66047, United States.
Scott LovellProtein Structure Laboratory, Del Shankel Structural Biology Center, University of Kansas, Lawrence, KS 66047, United States.
Kevin P BattaileIMCA-CAT, Hauptman Woodward Medical Research Institute, Argonne, IL 60439, United States.
Shoichi TachiyamaDepartment of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS 66047, United States.
David K JohnsonComputational Chemical Biology Laboratory, Del Shankel Structural Biology Center, University of Kansas, Lawrence, KS 66047, United States.
Wendy L PickingDepartment of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS 66047, United States.
William D PickingDepartment of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS 66047, United States. Electronic address: picking@ku.edu.

Funding

Synthetic Chemical Biology CoreP20GM113117 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OROZCO, ROBIN C. · 2016 to 2025
$23.9M
Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
Assembly/function of the sorting platform of the Shigella type III secretion apparatusR01AI123351 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WILLIAM D. · 2016 to 2020
$2.2M
Identification of small molecule probes for dissecting the roles of sorting platform components within the type III secretion systemR21AI146517 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WILLIAM D. · 2019 to 2020
$417k
NIAID NIH HHS R01 AI123351NIAID NIH HHS R21 AI146517NIGMS NIH HHS P20 GM113117NIGMS NIH HHS P30 GM110761
6 · The paper itself

Abstract

Many Gram-negative bacterial pathogens use type III secretion systems (T3SS) to inject proteins into eukaryotic cells to subvert normal cellular functions. The T3SS apparatus (injectisome) shares a common architecture in all systems studied thus far, comprising three major components - the cytoplasmic sorting platform, envelope-spanning basal body and external needle with tip complex. The sorting platform consists of an ATPase (SctN) connected to "pods" (SctQ) having six-fold symmetry via radial spokes (SctL). These pods interface with the 24-fold symmetric SctD inner membrane ring (IR) via an adaptor protein (SctK). Here we report the first high-resolution structure of a SctK protein family member, PscK from Pseudomonas aeruginosa, as well as the structure of its interacting partner, the cytoplasmic domain of PscD (SctD). The cytoplasmic domain of PscD forms a forkhead-associated (FHA) fold, like that of its homologues from other T3SS. PscK, on the other hand, forms a helix-rich structure that does not resemble any known protein fold. Based on these structural findings, we present the first model for an interaction between proteins from the sorting platform and the IR. We also test the importance of the PscD residues predicted to mediate this electrostatic interaction using a two-hybrid analysis. The functional need for these residues in vivo was then confirmed by monitoring secretion of the effector ExoU. These structures will contribute to the development of atomic-resolution models of the entire sorting platform and to our understanding of the mechanistic interface between the sorting platform and the basal body of the injectisome.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsBasal BodiesCytoplasmCytosolProtein TransportPseudomonas aeruginosaType III Secretion SystemsAdenosine TriphosphatasesBacterial ProteinsType III Secretion Systemsbasal bodyPscD/SctDPscK/SctKsorting platformtype III secretion system

Identifiers

PMID33122003
PMCPMC10550303

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.