Evidence map›Paper›PMID 33120928›Full record

ArticlePathogens (Basel, Switzerland)2020

Genomic Features and Evolution of the Parapoxvirus during the Past Two Decades.

Xiaoting Yao, Ming Pang, Tianxing Wang, Xi Chen, Xidian Tang, Jianjun Chang, Dekun Chen, Wentao Ma

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Xiaoting YaoCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China.ORCID 0000-0002-2853-6240
Ming PangCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China.
Tianxing WangCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China.
Xi ChenCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China.
Xidian TangCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China.
Jianjun ChangCollege of Agriculture and Animal Husbandry, Qinghai University, Xining 810016, China.
Dekun ChenCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China.
Wentao MaCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China.
Northwest A&F University · CNQinghai University · CN

Funding

Basic Research Plan of Natural Science of Shaanxi Province 2020JQ-270Key projects of Science and technology coordination in Shaanxi Province 2020ZDLNY02-06National Natural Science Foundation of China 31902282Science and Technology Project of Qinghai Agriculture and Pastoral Department NMSY-2018-07
6 · The paper itself

Abstract

Parapoxvirus (PPV) has been identified in some mammals and poses a great threat to both the livestock production and public health. However, the prevalence and evolution of this virus are still not fully understood. Here, we performed an in silico analysis to investigate the genomic features and evolution of PPVs. We noticed that although there were significant differences of GC contents between orf virus (ORFV) and other three species of PPVs, all PPVs showed almost identical nucleotide bias, that is GC richness. The structural analysis of PPV genomes showed the divergence of different PPV species, which may be due to the specific adaptation to their natural hosts. Additionally, we estimated the phylogenetic diversity of seven different genes of PPV. According to all available sequences, our results suggested that during 2010-2018, ORFV was the dominant virus species under the selective pressure of the optimal gene patterns. Furthermore, we found the substitution rates ranged from 3.56 × 10

Indexed as

evolutionnucleotide compositionparapoxvirusPoxviridaeselection pressure

Identifiers

PMID33120928
PMCPMC7694016
OpenAlexW3095986402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.