Evidence map›Paper›PMID 33119767›Full record

ArticleNucleic acids research2020

Discovery and development of novel DNA-PK inhibitors by targeting the unique Ku-DNA interaction.

Navnath S Gavande, Pamela S VanderVere-Carozza, Katherine S Pawelczak, Pamela Mendoza-Munoz, Tyler L Vernon, Leslyn A Hanakahi, Matthew Summerlin, Joseph R Dynlacht, Annabelle H Farmer, Catherine R Sears and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. The N-Myc-responsive lncRNA MILIP promotes DNA double-strand break repair through non-homologous end joining.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Frontiers in oncology · 2022
    Article
  15. Review
  16. Review
  17. Nucleic Acid Sensing Pathways in DNA Repair Targeted Cancer Therapy.Frontiers in cell and developmental biology · 2022
    Review
  18. The Multifaceted Roles of Ku70/80.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Navnath S GavandeDepartment of Medicine, Indiana University School of Medicine, Indianapolis IN 46202, USA.
Pamela S VanderVere-CarozzaDepartment of Medicine, Indiana University School of Medicine, Indianapolis IN 46202, USA.
Katherine S PawelczakNERx Biosciences, 212 W 10th St. Suite A480, Indianapolis, IN 46202, USA.
Pamela Mendoza-MunozDepartment of Medicine, Indiana University School of Medicine, Indianapolis IN 46202, USA.
Tyler L VernonDepartment of Medicine, Indiana University School of Medicine, Indianapolis IN 46202, USA.
Leslyn A HanakahiDepartment of Biopharmaceutical Sciences, University of Illinois College of Pharmacy, Rockford, IL 61107, USA.
Matthew SummerlinDepartment of Biopharmaceutical Sciences, University of Illinois College of Pharmacy, Rockford, IL 61107, USA.
Joseph R DynlachtDepartment of Radiation Oncology, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Annabelle H FarmerDepartment of Medicine, Indiana University School of Medicine, Indianapolis IN 46202, USA.
Catherine R SearsDepartment of Medicine, Indiana University School of Medicine, Indianapolis IN 46202, USA.
Nawar Al NasrallahDepartment of Medicine, Indiana University School of Medicine, Indianapolis IN 46202, USA.
Joy GarrettDepartment of Radiation Oncology, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
John J TurchiDepartment of Medicine, Indiana University School of Medicine, Indianapolis IN 46202, USA.
Indiana University School of MedicineNĒRx BioSciences (United States) · USUniversity of Illinois Urbana-Champaign · USWayne State University · US

Funding

IU Training Program in Molecular Physiology and Clinical Mechanisms of Lung DiseaseT32HL091816 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI Erick Forno, Roberto F. Machado · 2009 to 2026
$4.3M
Discovery and development of Ku-targeted small molecule inhibitors: A novel mechanism of DNA-PK inhibitionR01CA247370 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI Navnath S Gavande, JOHN J. TURCHI · 2020 to 2026
$3.5M
Development of novel Ku targeted kinase inhibitorsR43CA221562 · NCI · NERX BIOSCIENCES, INC. · PI PAWELCZAK, KATHERINE · 2017 to 2017
$300k
Chemical enhancement of CRISPR/Cas9 mediated site-specific genome engineeringR43GM119880 · NIGMS · NERX BIOSCIENCES, INC. · PI PAWELCZAK, KATHERINE, TURCHI, JOHN J. · 2016 to 2016
$293k
NCI NIH HHS R01 CA247370NCI NIH HHS R43 CA221562NHLBI NIH HHS T32 HL091816NIGMS NIH HHS R43 GM119880
6 · The paper itself

Abstract

DNA-dependent protein kinase (DNA-PK) plays a critical role in the non-homologous end joining (NHEJ) repair pathway and the DNA damage response (DDR). DNA-PK has therefore been pursued for the development of anti-cancer therapeutics in combination with ionizing radiation (IR). We report the discovery of a new class of DNA-PK inhibitors that act via a novel mechanism of action, inhibition of the Ku-DNA interaction. We have developed a series of highly potent and specific Ku-DNA binding inhibitors (Ku-DBi's) that block the Ku-DNA interaction and inhibit DNA-PK kinase activity. Ku-DBi's directly interact with the Ku and inhibit in vitro NHEJ, cellular NHEJ, and potentiate the cellular activity of radiomimetic agents and IR. Analysis of Ku-null cells demonstrates that Ku-DBi's cellular activity is a direct result of Ku inhibition, as Ku-null cells are insensitive to Ku-DBi's. The utility of Ku-DBi's was also revealed in a CRISPR gene-editing model where we demonstrate that the efficiency of gene insertion events was increased in cells pre-treated with Ku-DBi's, consistent with inhibition of NHEJ and activation of homologous recombination to facilitate gene insertion. These data demonstrate the discovery and application of new series of compounds that modulate DNA repair pathways via a unique mechanism of action.

Indexed as

AnimalsCells, CulturedDNADNA-Activated Protein KinaseDNA Breaks, Double-StrandedDNA End-Joining RepairGene EditingHumansKu AutoantigenMiceProtein Kinase InhibitorsDNADNA-Activated Protein KinaseKu AutoantigenProtein Kinase Inhibitors

Identifiers

PMID33119767
PMCPMC7672428
OpenAlexW3094732353

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.