Evidence map›Paper›PMID 33119547›Full record

Trial reportThe Journal of clinical investigation2021

Sustained cellular immune dysregulation in individuals recovering from SARS-CoV-2 infection.

Jacob K Files, Sushma Boppana, Mildred D Perez, Sanghita Sarkar, Kelsey E Lowman, Kai Qin, Sarah Sterrett, Eric Carlin, Anju Bansal, Steffanie Sabbaj and 5 more

Open access · bronzeAbstract readClinical Trial
In one paragraph

Trial report in The Journal of clinical investigation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 1 synthesis or guideline pooled it, 157 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Post-Covid-19 Symptoms in Children: A Cross-Sectional Survey.Journal of paediatrics and child health · 2025
    Article
  13. Article
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  16. Relationship Between Acute SARS-CoV-2 Viral Clearance and Long COVID-19 (Long COVID) Symptoms: A Cohort Study.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Article

35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Jacob K FilesDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Sushma BoppanaDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Mildred D PerezDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Sanghita SarkarDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Kelsey E LowmanDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Kai QinDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Sarah SterrettDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Eric CarlinDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Anju BansalDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Steffanie SabbajDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Dustin M LongDepartment of Biostatistics, School of Public Health, and.
Olaf KutschDivision of Infectious Diseases, Department of Medicine, School of Medicine.
James KobieDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Paul A GoepfertDivision of Infectious Diseases, Department of Medicine, School of Medicine.
Nathan ErdmannDivision of Infectious Diseases, Department of Medicine, School of Medicine.
University of Alabama at Birmingham · US

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Latesha Ellen Elopre · 1988 to 2026
$84.1M
Overcoming HIV-1 transcriptional latency in unresponsive CD4 T cellsR01AI122842 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2017 to 2020
$2.6M
Identification of drugs that induce terminal transcriptional silencing of latent HIV-1 infectionR61AI133679 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2017 to 2019
$2.0M
Identification of drugs that induce terminal transcriptional silencing of latent HIV-1 infectionR33AI133679 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2020 to 2021
$1.4M
Kinomic analysis of host cell factors controlling latent HIV-1 infectionR33AI116188 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2016 to 2018
$1.3M
Viral adaptation to CD4 T cell responses and the impact on HIV immunityK08AI129705 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ERDMANN, NATHANIEL BERNARD · 2017 to 2021
$930k
Overcoming HIV-1 transcriptional latency in unresponsive CD4 T cellsR56AI122842 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2016 to 2016
$455k
NIAID NIH HHS K08 AI129705NIAID NIH HHS P30 AI027767NIAID NIH HHS R01 AI122842NIAID NIH HHS R33 AI116188NIAID NIH HHS R33 AI133679NIAID NIH HHS R56 AI122842NIAID NIH HHS R61 AI133679
6 · The paper itself

Abstract

SARS-CoV-2 causes a wide spectrum of clinical manifestations and significant mortality. Studies investigating underlying immune characteristics are needed to understand disease pathogenesis and inform vaccine design. In this study, we examined immune cell subsets in hospitalized and nonhospitalized individuals. In hospitalized patients, many adaptive and innate immune cells were decreased in frequency compared with those of healthy and convalescent individuals, with the exception of an increase in B lymphocytes. Our findings show increased frequencies of T cell activation markers (CD69, OX40, HLA-DR, and CD154) in hospitalized patients, with other T cell activation/exhaustion markers (PD-L1 and TIGIT) remaining elevated in hospitalized and nonhospitalized individuals. B cells had a similar pattern of activation/exhaustion, with increased frequency of CD69 and CD95 during hospitalization followed by an increase in PD1 frequencies in nonhospitalized individuals. Interestingly, many of these changes were found to increase over time in nonhospitalized longitudinal samples, suggesting a prolonged period of immune dysregulation after SARS-CoV-2 infection. Changes in T cell activation/exhaustion in nonhospitalized patients were found to positively correlate with age. Severely infected individuals had increased expression of activation and exhaustion markers. These data suggest a prolonged period of immune dysregulation after SARS-CoV-2 infection, highlighting the need for additional studies investigating immune dysregulation in convalescent individuals.

Indexed as

Lymphocyte ActivationAdultAgedAged, 80 and overAntigens, DifferentiationB-LymphocytesCOVID-19FemaleHumansMaleMiddle AgedSARS-CoV-2T-LymphocytesAntigens, DifferentiationCellular immune responseCOVID-19Immunology

Identifiers

PMID33119547
PMCPMC7773371
OpenAlexW3094956147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.