Evidence map›Paper›PMID 33117139›Full record

ArticleFrontiers in computational neuroscience2020

Identifiability of a Binomial Synapse.

Camille Gontier, Jean-Pascal Pfister

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Article in Frontiers in computational neuroscience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

2 authors.

Camille GontierDepartment of Physiology, University of Bern, Bern, Switzerland.
Jean-Pascal PfisterDepartment of Physiology, University of Bern, Bern, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synapses are highly stochastic transmission units. A classical model describing this stochastic transmission is called the binomial model, and its underlying parameters can be estimated from postsynaptic responses to evoked stimuli. The accuracy of parameter estimates obtained via such a model-based approach depends on the identifiability of the model. A model is said to be structurally identifiable if its parameters can be uniquely inferred from the distribution of its outputs. However, this theoretical property does not necessarily imply practical identifiability. For instance, if the number of observations is low or if the recording noise is high, the model's parameters can only be loosely estimated. Structural identifiability, which is an intrinsic property of a model, has been widely characterized; but practical identifiability, which is a property of both the model and the experimental protocol, is usually only qualitatively assessed. Here, we propose a formal definition for the practical identifiability domain of a statistical model. For a given experimental protocol, this domain corresponds to the set of parameters for which the model is correctly identified as the ground truth compared to a simpler alternative model. Considering a model selection problem instead of a parameter inference problem allows to derive a non-arbitrary criterion for practical identifiability. We apply our definition to the study of neurotransmitter release at a chemical synapse. Our contribution to the analysis of synaptic stochasticity is three-fold: firstly, we propose a quantitative criterion for the practical identifiability of a statistical model, and compute the identifiability domains of different variants of the binomial release model (uni or multi-quantal, with or without short-term plasticity); secondly, we extend the Bayesian Information Criterion (BIC), a classically used tool for model selection, to models with correlated data (which is the case for most models of chemical synapses); finally, we show that our approach allows to perform data free model selection, i.e., to verify if a model used to fit data was indeed identifiable even without access to the data, but having only access to the fitted parameters.

Indexed as

binomialmodel selectionpractical identifiabilitystructural identifiabilitysynapse

Identifiers

PMID33117139
PMCPMC7561371

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.