Evidence map›Paper›PMID 33115767›Full record

ArticleCold Spring Harbor molecular case studies2020

Rapid whole-genome sequencing identifies a homozygous novel variant, His540Arg, in

Lane Savage, Stacie D Adams, Kiely James, Shimul Chowdhury, Surender Rajasekaran, Jeremy W Prokop, Caleb Bupp

Open access · diamondAbstract read
In one paragraph

Article in Cold Spring Harbor molecular case studies, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Lane SavageDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, Michigan 49503, USA.
Stacie D AdamsDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, Michigan 49503, USA.
Kiely JamesRady Children's Institute for Genomic Medicine, San Diego, California 92123, USA.
Shimul ChowdhuryRady Children's Institute for Genomic Medicine, San Diego, California 92123, USA.
Surender RajasekaranDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, Michigan 49503, USA.
Jeremy W ProkopDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, Michigan 49503, USA.
Caleb BuppDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, Michigan 49503, USA.
Children’s Institute · USMichigan State University · USCorewell Health Blodgett Hospital · USGrand Rapids Community College · USSpectrum Health · US

Funding

Using a Sequence-to-Structure-to-Function Approach to Functionally Characterize Protein Coding Missense Mutations in the Human and Rat GenomesK01ES025435 · NIEHS · MICHIGAN STATE UNIVERSITY · PI PROKOP, JEREMY WILLIAM · 2014 to 2018
$489k
NIEHS NIH HHS K01 ES025435
6 · The paper itself

Abstract

Rapid whole-genome sequencing (rWGS) allows for a diagnosis to be made quickly and impact medical management, particularly in critically ill children. Variants identified by this approach are often not identified using other testing methodologies, such as carrier screening or gene sequencing panels, targeted panels, or chromosomal microarrays. However, rWGS can identify variants of uncertain significance (VUSs), which challenges clinicians in the rapid return of information to families. Here we present a case of the metabolic condition D-bifunctional protein deficiency in a neonate with epilepsy and hypotonia born to consanguineous parents. Sequencing revealed a homozygous VUS in

Indexed as

HomozygoteWhole Genome SequencingFatty AcidsFemaleGenetic Predisposition to DiseaseHumansInfantModels, MolecularMuscle HypotoniaPathology, MolecularPeroxisomal Multifunctional Protein-2Protein ConformationProtein DeficiencyFatty AcidsHSD17B4 protein, humanPeroxisomal Multifunctional Protein-2generalized neonatal hypotoniainfantile spasmsrespiratory difficultiesrespiratory insufficiency due to muscle weaknessvery long chain fatty acid accumulation

Identifiers

PMID33115767
PMCPMC7784488
OpenAlexW3096129997

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.