Evidence map›Paper›PMID 33115402›Full record

ArticleBMC microbiology2020

Experimental determination of evolutionary barriers to horizontal gene transfer.

Hande Acar Kirit, Mato Lagator, Jonathan P Bollback

Abstract read
In one paragraph

Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
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  9. Article
  10. Article
  11. Review
  12. The Role of the Environment in Horizontal Gene Transfer.Molecular biology and evolution · 2022
    Article
  13. Translational demand is not a major source of plasmid-associated fitness costs.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  14. Gene sharing among plasmids and chromosomes reveals barriers for antibiotic resistance gene transfer.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hande Acar KiritInstitute of Integrative Biology, Functional and Comparative Genomics, University of Liverpool, Liverpool, L69 7ZB, UK.
Mato LagatorFaculty of Biology, Medicine and Health, School of Biological Sciences, University of Manchester, Manchester, M13 9PT, UK.
Jonathan P BollbackInstitute of Integrative Biology, Functional and Comparative Genomics, University of Liverpool, Liverpool, L69 7ZB, UK. bollback@liverpool.ac.uk.ORCID 0000-0002-4624-4612

Funding

Wellcome TrustWellcome Trust 216779/Z/19/Z
6 · The paper itself

Abstract

backgroundHorizontal gene transfer, the acquisition of genes across species boundaries, is a major source of novel phenotypes that enables microbes to rapidly adapt to new environments. How the transferred gene alters the growth - fitness - of the new host affects the success of the horizontal gene transfer event and how rapidly the gene spreads in the population. Several selective barriers - factors that impact the fitness effect of the transferred gene - have been suggested to impede the likelihood of horizontal transmission, however experimental evidence is scarce. The objective of this study was to determine the fitness effects of orthologous genes transferred from Salmonella enterica serovar Typhimurium to Escherichia coli to identify the selective barriers using highly precise experimental measurements.

resultsWe found that most gene transfers result in strong fitness costs. Previously identified evolutionary barriers - gene function and the number of protein-protein interactions - did not predict the fitness effects of transferred genes. In contrast, dosage sensitivity, gene length, and the intrinsic protein disorder significantly impact the likelihood of a successful horizontal transfer.

conclusionWhile computational approaches have been successful in describing long-term barriers to horizontal gene transfer, our experimental results identified previously underappreciated barriers that determine the fitness effects of newly transferred genes, and hence their short-term eco-evolutionary dynamics.

Indexed as

Gene Transfer, HorizontalModels, GeneticEscherichia coliGenes, BacterialGenetic FitnessSalmonella typhimuriumDistribution of fitness effectsDosage sensitivityEvolutionary barriersGene lengthHorizontal gene transfer

Identifiers

PMID33115402
PMCPMC7592521

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.