Evidence map›Paper›PMID 33113349›Full record

ArticleBiophysical journal2020

Should Virus Capsids Assemble Perfectly? Theory and Observation of Defects.

Justin Spiriti, James F Conway, Daniel M Zuckerman

Abstract read
In one paragraph

Article in Biophysical journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Justin SpiritiDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, Oregon.
James F ConwayDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, Pennsylvania. Electronic address: james.conway@pitt.edu.
Daniel M ZuckermanDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, Oregon. Electronic address: zuckermd@ohsu.edu.

Funding

WESTPA: A high-performance framework for simulating at the frontiers of biologyR01GM115805 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LILLIAN T CHONG · 2015 to 2026
$4.0M
Heterogeneity in Virus Capsid Assembly and StructureR21AI130745 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI CONWAY, JAMES F., ZUCKERMAN, DANIEL M · 2018 to 2019
$438k
NIAID NIH HHS R21 AI130745NIGMS NIH HHS R01 GM115805
6 · The paper itself

Abstract

Although published structural models of viral capsids generally exhibit a high degree of regularity or symmetry, structural defects might be expected because of the fluctuating environment in which capsids assemble and the requirement of some capsids for disassembly before genome delivery. Defective structures are observed in computer simulations, and are evident in single-particle cryoelectron microscopy studies. Here, we quantify the conditions under which defects might be expected, using a statistical mechanics model allowing for ideal, defective, and vacant sites. The model displays a threshold in affinity parameters below which there is an appreciable population of defective capsids. Even when defective sites are not allowed, there is generally some population of vacancies. Analysis of single particles in cryoelectron microscopy micrographs yields a confirmatory ≳15% of defective particles. Our findings suggest structural heterogeneity in virus capsids may be under-appreciated, and also points to a nontraditional strategy for assembly inhibition.

Indexed as

CapsidVirionCryoelectron MicroscopyVirus Assembly

Identifiers

PMID33113349
PMCPMC7677133

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.