Evidence map›Paper›PMID 33112498›Full record

ArticleAmerican journal of medical genetics. Part A2021

ECHS1 disease in two unrelated families of Samoan descent: Common variant - rare disorder.

Mariella T Simon, Shaya S Eftekharian, Sacha Ferdinandusse, Sha Tang, Take Naseri, Muagututi'a Sefuiva Reupena, Stephen T McGarvey, Ryan L Minster, Daniel E Weeks, Samoan Obesity, Lifestyle, and Genetic Adaptations (OLaGA) Study Group and 7 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. RNA Sequencing Resolves Cryptic Pathogenic Variants in Mitochondrial Disease.Annals of clinical and translational neurology · 2026
    Article
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  6. BiallelicBrain communications · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 6 countries.

Mariella T SimonDivision of Metabolic Disorders, CHOC Children's Hospital, Orange, California, USA.ORCID 0000-0002-8200-3277
Shaya S EftekharianDivision of Metabolic Disorders, CHOC Children's Hospital, Orange, California, USA.
Sacha FerdinandusseLaboratory Genetic Metabolic Diseases, Department of Clinical Chemistry, Amsterdam UMC, University of Amsterdam, Amsterdam Gastroenterology and Metabolism, Amsterdam, The Netherlands.
Sha TangDepartment of Clinical Genomics, Ambry Genetics, California, USA.
Take NaseriMinistry of Health, Apia, Samoa.
Muagututi'a Sefuiva ReupenaLutia i Puava ae Mapu i Fagalele, Apia, Samoa.
Stephen T McGarveyDepartment of Epidemiology, International Health Institute, Brown University School of Public Health, Providence, Rhode Island, USA.
Ryan L MinsterDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Daniel E WeeksDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0001-9410-7228
Samoan Obesity, Lifestyle, and Genetic Adaptations (OLaGA) Study Group
Daniel D NguyenDivision of Metabolic Disorders, CHOC Children's Hospital, Orange, California, USA.
Sansan LeeHawaii Community Genetics, Hawai'i Pacific Health, Honolulu, Hawaii, USA.
Katarzyna A EllsworthRady Children's Institute for Genomic Medicine, San Diego, California, USA.
Frédéric M VazDepartment of Paediatrics, University of Melbourne, Victorian Clinical Genetics Services, Murdoch Childrens Research Institute, Melbourne, Victoria, Australia.ORCID 0000-0002-9048-1041
David DimmockRady Children's Institute for Genomic Medicine, San Diego, California, USA.
James PittDepartment of Paediatrics, University of Melbourne, Victorian Clinical Genetics Services, Murdoch Childrens Research Institute, Melbourne, Victoria, Australia.
Jose E AbdenurDivision of Metabolic Disorders, CHOC Children's Hospital, Orange, California, USA.
Children's Hospital of Orange County · USChildren’s Institute · USUniversity of Pittsburgh · USAmsterdam University Medical Centers · NLInstitut thématique Génétique, génomique et bioinformatique · FRNational University of Samoa · WSRhode Island Department of Health · US

Funding

Studies of Rare Genetic Variation in the Isolated Population of SardiniaR01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2013 to 2016
$10.5M
Rare variants and NHLBI traits in deeply phenotyped cohortsR01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2014 to 2016
$8.9M
Integrated cellular, mouse and human research on a novel missense variant influencing adiposity in SamoansR01HL093093 · NHLBI · BROWN UNIVERSITY · PI MCGARVEY, STEPHEN T. · 2009 to 2019
$8.2M
Next Generation Association Studies of Adiposity in Samoans Enhanced by a Samoan-Specific Whole Genome Sequence Reference PanelR01HL133040 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Ryan Lee Minster · 2017 to 2026
$7.5M
UCLA Medical Genetics Training ProgramT32GM008243 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Julian Martinez-Agosto, STANLEY F. NELSON · 1987 to 2026
$6.8M
Rare variants and NHLBI traits in deeply phenotyped cohortsU01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2017 to 2018
$5.6M
NHLBI NIH HHS 3R01HL-117626-02S1NHLBI NIH HHS HHSN268201100037CNHLBI NIH HHS HHSN268201500016CNHLBI NIH HHS HHSN268201800001CNHLBI NIH HHS HHSN268201800001INHLBI NIH HHS HHSN268201800002INHLBI NIH HHS R01 HL093093NHLBI NIH HHS R01HL-120393NHLBI NIH HHS R01 HL133040NHLBI NIH HHS U01HL-120393NIGMS NIH HHS T32 GM008243NIH HHS 5T32GM008243-32NIH HHS HL133040
6 · The paper itself

Abstract

Mutations in the short-chain enoyl-CoA hydratase (SCEH) gene, ECHS1, cause a rare autosomal recessive disorder of valine catabolism. Patients usually present with developmental delay, regression, dystonia, feeding difficulties, and abnormal MRI with bilateral basal ganglia involvement. We present clinical, biochemical, molecular, and functional data for four affected patients from two unrelated families of Samoan descent with identical novel compound heterozygous mutations. Family 1 has three affected boys while Family 2 has an affected daughter, all with clinical and MRI findings of Leigh syndrome and intermittent episodes of acidosis and ketosis. WES identified a single heterozygous variant in ECHS1 at position c.832G > A (p.Ala278Thr). However, western blot revealed significantly reduced ECHS1 protein for all affected family members. Decreased SCEH activity in fibroblasts and a mild increase in marker metabolites in urine further supported ECHS1 as the underlying gene defect. Additional investigations at the DNA (aCGH, WGS) and RNA (qPCR, RT-PCR, RNA-Seq, RNA-Array) level identified a silent, common variant at position c.489G > A (p.Pro163=) as the second mutation. This substitution, present at high frequency in the Samoan population, is associated with decreased levels of normally spliced mRNA. To our understanding, this is the first report of a novel, hypomorphic allele c.489G > A (p.Pro163=), associated with SCEH deficiency.

Indexed as

Genetic Predisposition to DiseaseAdolescentChildChild, PreschoolEnoyl-CoA HydrataseFemaleHeterozygoteHumansInfantMaleMutationRare DiseasesSamoaECHS1 protein, humanEnoyl-CoA HydrataseECHS1Leigh syndromemitochondrial diseaseSamoan populationsilent variant

Identifiers

PMID33112498
PMCPMC7746601
OpenAlexW3096527590

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.