Evidence map›Paper›PMID 33111353›Full record

ArticleJournal of neurochemistry2021

A multi-omic analysis of the dorsal striatum in an animal model of divergent genetic risk for alcohol use disorder.

Gregory G Grecco, David L Haggerty, Emma H Doud, Brandon M Fritz, Fuqin Yin, Hunter Hoffman, Amber L Mosley, Edward Simpson, Yunlong Liu, Anthony J Baucum and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of neurochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Gregory G GreccoDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID 0000-0002-0700-8633
David L HaggertyDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID 0000-0002-1455-2557
Emma H DoudDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA.
Brandon M FritzDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, IN, USA.
Fuqin YinDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, IN, USA.
Hunter HoffmanDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, IN, USA.
Amber L MosleyDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA.
Edward SimpsonDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA.
Yunlong LiuDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA.
Anthony J BaucumDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID 0000-0002-4756-9865
Brady K AtwoodDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, IN, USA.
Indiana University School of MedicineUniversity of Indianapolis · US

Funding

Translational Research and Science Education (OUT)P60AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI Nicholas Joseph Grahame · 2003 to 2026
$45.5M
Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
TRAINING GRANT ON GENETICS ASPECTS OF ALCOHOLISMT32AA007462 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI CRISTINE L CZACHOWSKI · 1985 to 2026
$10.7M
Indiana Medical Scientist/Engineer Training ProgramT32GM077229 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI GASTON, BENJAMIN, HERBERT, BRITTNEY-SHEA · 2008 to 2022
$6.0M
Synapse-specific interactions between ethanol and opioid receptor-mediated synaptic depression in dorsal striatum: ADRD suppR01AA027214 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI ATWOOD, BRADY · 2018 to 2022
$2.5M
Dorsal Striatal Adenosine A1 Receptors in Alcohol-Induced Synaptic and Behavioral PlasticityF32AA026488 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI FRITZ, BRANDON MICHAEL · 2018 to 2020
$172k
Anterior insular cortex to dorsolateral striatum neural circuit regulation of binge drinking and habitual behaviorsF31AA029297 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI HAGGERTY, DAVID LEO · 2021 to 2023
$51k
NCATS NIH HHS UL1 TR002529NIAAA NIH HHS F31 AA029297NIAAA NIH HHS F32 AA026488NIAAA NIH HHS P60 AA007611NIAAA NIH HHS R01 AA027214NIAAA NIH HHS T32 AA007462NIGMS NIH HHS T32 GM077229NIH HHS F32 AA026488NIH HHS R01AA027214NIH HHS T32AA007462NIH HHS UL1TR002529
6 · The paper itself

Abstract

The development of selectively bred high and low alcohol-preferring mice (HAP and LAP, respectively) has allowed for an assessment of the polygenetic risk for pathological alcohol consumption and phenotypes associated with alcohol use disorder (AUD). Accumulating evidence indicates that the dorsal striatum (DS) is a central node in the neurocircuitry underlying addictive processes. Therefore, knowledge of differential gene, protein, and phosphorylated protein expression in the DS of HAP and LAP mice may foster new insights into how aberrant DS functioning may contribute to AUD-related phenotypes. To begin to elucidate these basal differences, a complementary and integrated analysis of DS tissue from alcohol-naïve male and female HAP and LAP mice was performed using RNA sequencing, quantitative proteomics, and phosphoproteomics. These datasets were subjected to a thorough analysis of gene ontology, pathway enrichment, and hub gene assessment. Analyses identified 2,108, 390, and 521 significant differentially expressed genes, proteins, and phosphopeptides, respectively between the two lines. Network analyses revealed an enrichment in the differential expression of genes, proteins, and phosphorylated proteins connected to cellular organization, cytoskeletal protein binding, and pathways involved in synaptic transmission and functioning. These findings suggest that the selective breeding to generate HAP and LAP mice may lead to a rearrangement of synaptic architecture which could alter DS neurotransmission and plasticity differentially between mouse lines. These rich datasets will serve as an excellent resource to inform future studies on how inherited differences in gene, protein, and phosphorylated protein expression contribute to AUD-related phenotypes.

Indexed as

Corpus StriatumDisease Models, AnimalAlcoholismAnimalsFemaleGenetic Predisposition to DiseaseGenomicsMaleMiceProteomicsAlcoholAUDDorsal StriatumPhosphoproteomicsProteomicsRNA-sequencing

Identifiers

PMID33111353
PMCPMC8076345
OpenAlexW3096870202

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.