Protocol for Projecting Allele Frequency Change under Future Climate Change at Adaptive-Associated Loci.

Meghan Blumstein, Andrew Richardson, David Weston, Jin Zhang, Wellington Muchero, Robin Hopkins

Abstract read

In one paragraph

Article in STAR protocols, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it

0cells of the map it votes in

2citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

Local adaptation ofEcology and evolution · 2024
Article
PeerJ · 2021
Article

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Meghan BlumsteinDepartment of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA.

Andrew RichardsonCenter for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ 86011, USA.

David WestonBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.

Jin ZhangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.

Wellington MucheroBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.

Robin HopkinsDepartment of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe how to predict population-level allele frequency change at loci associated with locally adapted traits under future climate conditions. Our method can identify populations that are at higher risk of local extinction and those that might be prime targets for conservation intervention. We draw on previously developed community ecology statistical methods and apply them in novel ways to plant genomes. While a powerful diagnostic tool, our method requires a wealth of genomic data for use. For complete details on the use and execution of this protocol, please refer to Blumstein et al. (2020).

Indexed as

Climate ChangeAdaptation, BiologicalDatabases, GeneticGene FrequencyGenetic LociGenetics, PopulationGenome, PlantModels, Genetic

Identifiers

PMID33111101

DOI10.1016/j.xpro.2020.100061

PMCPMC7580235

What OpenQuestion holds

Textmetadata

LicenceCC BY

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.