Evidence map›Paper›PMID 33110096›Full record

ArticleScientific reports2020

Structural modeling of GSK3β implicates the inactive (DFG-out) conformation as the target bound by TDZD analogs.

Meenakshisundaram Balasubramaniam, Nirjal Mainali, Suresh Kuarm Bowroju, Paavan Atluri, Narsimha Reddy Penthala, Srinivas Ayyadevera, Peter A Crooks, Robert J Shmookler Reis

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Meenakshisundaram BalasubramaniamMcClellan Veterans Medical Ctr., Central Arkansas Veterans Healthcare Service, Little Rock, AR, 72205, USA. mbalasubramaniam@uams.edu.
Nirjal MainaliBioinformatics Program, University of Arkansas for Medical Sciences, and University of Arkansas At Little Rock, Little Rock, AR, 72205, USA.
Suresh Kuarm BowrojuDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Arkansas for Medical Sciences, Little Rock, AR, 72205, USA.
Paavan AtluriSummer Research Internship Program, University of Arkansas for Medical Sciences, Little Rock, AR, 72205, USA.
Narsimha Reddy PenthalaDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Arkansas for Medical Sciences, Little Rock, AR, 72205, USA.
Srinivas AyyadeveraMcClellan Veterans Medical Ctr., Central Arkansas Veterans Healthcare Service, Little Rock, AR, 72205, USA.
Peter A CrooksDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Arkansas for Medical Sciences, Little Rock, AR, 72205, USA.
Robert J Shmookler ReisMcClellan Veterans Medical Ctr., Central Arkansas Veterans Healthcare Service, Little Rock, AR, 72205, USA. rjsr@uams.edu.
University of Arkansas for Medical Sciences · USCentral Arkansas Veterans Healthcare System · USInstitute on Aging · US

Funding

THE APOE-APP AXIS IN ALZHEIMER PATHOGENESISP01AG012411 · NIA · UNIV OF ARKANSAS FOR MED SCIS · PI GRIFFIN, SUE TILTON · 1995 to 2020
$25.0M
Inference of Common Pathways Underlying Neurodegeneration & Other Age-Progressive DiseasesR01AG062254 · NIA · UNIV OF ARKANSAS FOR MED SCIS · PI AYYADEVARA, SRINIVAS, SHMOOKLER REIS, ROBERT JOSEPH · 2018 to 2022
$1.9M
Analysis and Therapy of Age-Dependent Proteostasis Failure in NeurodegenerationI01BX001655 · VA · CENTRAL ARKANSAS VETERANS HLTHCARE SYS · PI SHMOOKLER REIS, ROBERT JOSEPH · 2013 to 2022
–
BLR&D Research Career Scientist AwardIK6BX004851 · VA · CENTRAL ARKANSAS VETERANS HLTHCARE SYS · PI Robert Joseph Shmookler Reis · 2020 to 2026
–
BLRD VA I01 BX001655BLRD VA IK6 BX004851NIA NIH HHS P01 AG012411NIA NIH HHS P01 AG012411-17A1NIA NIH HHS R01 482 AG062254-01NIA NIH HHS R01 AG062254VA BX001655
6 · The paper itself

Abstract

Glycogen synthase kinase-3β (GSK3β) controls many physiological pathways, and is implicated in many diseases including Alzheimer's and several cancers. GSK3β-mediated phosphorylation of target residues in microtubule-associated protein tau (MAPTAU) contributes to MAPTAU hyperphosphorylation and subsequent formation of neurofibrillary tangles. Inhibitors of GSK3β protect against Alzheimer's disease and are therapeutic for several cancers. A thiadiazolidinone drug, TDZD-8, is a non-ATP-competitive inhibitor targeting GSK3β with demonstrated efficacy against multiple diseases. However, no experimental data or models define the binding mode of TDZD-8 with GSK3β, which chiefly reflects our lack of an established inactive conformation for this protein. Here, we used metadynamic simulation to predict the three-dimensional structure of the inactive conformation of GSK3β. Our model predicts that phosphorylation of GSK3β Serine9 would hasten the DFG-flip to an inactive state. Molecular docking and simulation predict the TDZD-8 binding conformation of GSK3β to be inactive, and are consistent with biochemical evidence for the TDZD-8-interacting residues of GSK3β. We also identified the pharmacophore and assessed binding efficacy of second-generation TDZD analogs (TDZD-10 and Tideglusib) that bind GSK3β as non-ATP-competitive inhibitors. Based on these results, the predicted inactive conformation of GSK3β can facilitate the identification of novel GSK3β inhibitors of high potency and specificity.

Indexed as

Binding SitesCatalytic DomainGlycogen Synthase Kinase 3 betaHumansMolecular Docking SimulationProtein ConformationThiadiazoles4-benzyl-2-methyl-1,2,4-thiadiazolidine-3,5-dioneGlycogen Synthase Kinase 3 betaGSK3B protein, humanThiadiazolestideglusib

Identifiers

PMID33110096
PMCPMC7591898
OpenAlexW3096195399

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.