Evidence map›Paper›PMID 33110086›Full record

ArticleScientific reports2020

Assessing the prognostic value of stemness-related genes in breast cancer patients.

Wen-Jie Wang, Han Wang, Meng-Sen Wang, Yue-Qing Huang, Yu-Yuan Ma, Jie Qi, Jian-Ping Shi, Wei Li

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Wen-Jie WangDepartment of Radio-Oncology, The Affiliated Suzhou Hospital of Nanjing Medical University, 26 Daoqian Street, Suzhou, 215001, Jiangsu, People's Republic of China.
Han WangDepartment of Oncology, Jining Tumor Hospital, Jining, 272000, Shandong, People's Republic of China.
Meng-Sen WangDepartment of Oncology, Jining No. 1 People's Hospital, Jining, 272011, Shandong, People's Republic of China.
Yue-Qing HuangDepartment of General Practice, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou, 215001, People's Republic of China.
Yu-Yuan MaDepartment of Thyroid and Breast Surgery, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou, 215001, Jiangsu, People's Republic of China.
Jie QiDepartment of Thyroid and Breast Surgery, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou, 215001, Jiangsu, People's Republic of China.
Jian-Ping ShiDepartment of Radio-Oncology, The Affiliated Suzhou Hospital of Nanjing Medical University, 26 Daoqian Street, Suzhou, 215001, Jiangsu, People's Republic of China. SLYY_drSJP@126.com.
Wei LiDepartment of Oncology, The First Affiliated Hospital of Soochow University, 188 Shizi Street, Suzhou, 215006, Jiangsu, People's Republic of China. liwei10@suda.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Breast cancer (BC) is currently one of the deadliest tumors worldwide. Cancer stem cells (CSCs) are a small group of tumor cells with self-renewal and differentiation abilities and high treatment resistance. One of the reasons for treatment failures is the inability to completely eliminate tumor stem cells. By using the edgeR package, we identified stemness-related differentially expressed genes in GSE69280. Via Lasso-penalized Cox regression analysis and univariate Cox regression analysis, survival genes were screened out to construct a prognostic model. Via nomograms and ROC curves, we verified the accuracy of the prognostic model. We selected 4 genes (PSMB9, CXCL13, NPR3, and CDKN2C) to establish a prognostic model from TCGA data and a validation model from GSE24450 data. We found that the low-risk score group had better OS than the high-risk score group, whether using TCGA or GSE24450 data. A prognostic model including four stemness-related genes was constructed in our study to determine targets of breast cancer stem cells (BCSCs) and improve the treatment effect.

Indexed as

AdultAgedAged, 80 and overBreast NeoplasmsChemokine CXCL13Cyclin-Dependent Kinase Inhibitor p18Cysteine EndopeptidasesFemaleGenes, NeoplasmGenetic Predisposition to DiseaseHumansMiddle AgedNeoplastic Stem CellsPrognosisProportional Hazards ModelsReceptors, Atrial Natriuretic Factoratrial natriuretic factor receptor CCDKN2C protein, humanChemokine CXCL13CXCL13 protein, humanCyclin-Dependent Kinase Inhibitor p18Cysteine EndopeptidasesLMP-2 proteinReceptors, Atrial Natriuretic Factor

Identifiers

PMID33110086
PMCPMC7591576

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.