Evidence map›Paper›PMID 33109720›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Evolution of regulatory signatures in primate cortical neurons at cell-type resolution.

Alexey Kozlenkov, Marit W Vermunt, Pasha Apontes, Junhao Li, Ke Hao, Chet C Sherwood, Patrick R Hof, John J Ely, Michael Wegner, Eran A Mukamel and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Cell-type-specificeLife · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 3 countries.

Alexey KozlenkovResearch & Development, James J. Peters VA Medical Center, Bronx, NY 10468.
Marit W VermuntHubrecht Institute, University Medical Center Utrecht, 3584 CT Utrecht, The Netherlands.ORCID 0000-0002-3570-1558
Pasha ApontesResearch & Development, James J. Peters VA Medical Center, Bronx, NY 10468.
Junhao LiDepartment of Cognitive Science, University of California San Diego, La Jolla, CA 92037.
Ke HaoDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Chet C SherwoodDepartment of Anthropology and Center for the Advanced Study of Human Paleobiology, The George Washington University, Washington, DC 20052.ORCID 0000-0001-6711-449X
Patrick R HofNash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
John J ElyAlamogordo Primate Facility, Holloman Air Force Base, Alamogordo, NM 88330.
Michael WegnerInstitut für Biochemie, Emil-Fischer-Zentrum, Friedrich-Alexander Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.ORCID 0000-0002-4586-3294
Eran A MukamelDepartment of Cognitive Science, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0003-3203-9535
Menno P CreyghtonHubrecht Institute, University Medical Center Utrecht, 3584 CT Utrecht, The Netherlands; m.creyghton@erasmusmc.nl koonin@ncbi.nlm.nih.gov stella.dracheva@mssm.edu.
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894 m.creyghton@erasmusmc.nl koonin@ncbi.nlm.nih.gov stella.dracheva@mssm.edu.ORCID 0000-0003-3943-8299
Stella DrachevaResearch & Development, James J. Peters VA Medical Center, Bronx, NY 10468; m.creyghton@erasmusmc.nl koonin@ncbi.nlm.nih.gov stella.dracheva@mssm.edu.ORCID 0000-0001-5917-8688
Allen Institute for Brain Science · USUniversity of California San Diego · USErasmus MC · NLFriedrich-Alexander-Universität Erlangen-Nürnberg · DEGeorge Washington University · USHolloman Air Force Base · USIcahn School of Medicine at Mount Sinai · USJames J. Peters VA Medical Center · USNational Institutes of Health · USUniversity Medical Center Utrecht · NL

Funding

Cell Specificity of the Human Heroin EpigenomeR01DA043247 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DRACHEVA, STELLA, HURD, YASMIN L. · 2017 to 2021
$2.7M
2/3 High-resolution mapping of cell type-specific DNA (hydroxy)methylation in the human brain during postnatal development and in psychiatric diseaseU01MH122590 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DRACHEVA, STELLA · 2020 to 2022
$1.4M
A National Chimpanzee Brain ResourceR24NS092988 · NINDS · GEORGE WASHINGTON UNIVERSITY · PI SHERWOOD, CHESTER · 2015 to 2018
$969k
2/3 High-resolution mapping of cell type-specific DNA (hydroxy)methylation in the human brain during postnatal development and in psychiatric diseaseR01MH122590 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DRACHEVA, STELLA · 2023 to 2024
$829k
GABA Epigenomes in AutismR21MH103877 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, DRACHEVA, STELLA · 2014 to 2015
$447k
Genetic and Molecular Determinants of SuicideI01BX001829 · VA · JAMES J PETERS VA MEDICAL CENTER · PI DRACHEVA, STELLA · 2014 to 2016
–
Neuronal Subtype Specific Epigenetic Regulation in SchizophreniaI01BX002876 · VA · JAMES J PETERS VA MEDICAL CENTER · PI DRACHEVA, STELLA · 2016 to 2020
–
BLRD VA I01 BX001829BLRD VA I01 BX002876BLRD VA I01 BX005585NIDA NIH HHS R01 DA043247NIMH NIH HHS R01 MH122590NIMH NIH HHS R21 MH103877NIMH NIH HHS U01 MH122590NINDS NIH HHS R24 NS092988
6 · The paper itself

Abstract

The human cerebral cortex contains many cell types that likely underwent independent functional changes during evolution. However, cell-type-specific regulatory landscapes in the cortex remain largely unexplored. Here we report epigenomic and transcriptomic analyses of the two main cortical neuronal subtypes, glutamatergic projection neurons and GABAergic interneurons, in human, chimpanzee, and rhesus macaque. Using genome-wide profiling of the H3K27ac histone modification, we identify neuron-subtype-specific regulatory elements that previously went undetected in bulk brain tissue samples. Human-specific regulatory changes are uncovered in multiple genes, including those associated with language, autism spectrum disorder, and drug addiction. We observe preferential evolutionary divergence in neuron subtype-specific regulatory elements and show that a substantial fraction of pan-neuronal regulatory elements undergoes subtype-specific evolutionary changes. This study sheds light on the interplay between regulatory evolution and cell-type-dependent gene-expression programs, and provides a resource for further exploration of human brain evolution and function.

Indexed as

Evolution, MolecularAnimalsAutism Spectrum DisorderBrainCerebral CortexEpigenesis, GeneticEpigenomicsGene ExpressionHistone CodeHumansInterneuronsMacaca mulattaNeuronsPan troglodytesPrimatesRegulatory Elements, TranscriptionalGABAergic neuronsglutamatergic neuronsH3K27ac histone modificationprimate evolutionregulatory elements

Identifiers

PMID33109720
PMCPMC7668098
OpenAlexW3095071594

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.