Evidence map›Paper›PMID 33109080›Full record

ArticleBMC genomics2020

Blood-based epigenetic estimators of chronological age in human adults using DNA methylation data from the Illumina MethylationEPIC array.

Yunsung Lee, Kristine L Haftorn, William R P Denault, Haakon E Nustad, Christian M Page, Robert Lyle, Sindre Lee-Ødegård, Gunn-Helen Moen, Rashmi B Prasad, Leif C Groop and 9 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 6 countries.

Yunsung LeeDepartment of Genetics and Bioinformatics, Norwegian Institute of Public Health, Oslo, Norway. Yunsung.Lee@fhi.no.ORCID http://orcid.org/0000-0002-2512-1082
Kristine L HaftornDepartment of Genetics and Bioinformatics, Norwegian Institute of Public Health, Oslo, Norway.
William R P DenaultDepartment of Genetics and Bioinformatics, Norwegian Institute of Public Health, Oslo, Norway.
Haakon E NustadCentre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway.
Christian M PageCentre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway.
Robert LyleCentre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway.
Sindre Lee-ØdegårdDepartment of Internal Medicine, Akershus University Hospital, Kongsvinger, Norway.
Gunn-Helen MoenInstitute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway.
Rashmi B PrasadDepartment of Clinical Sciences, Clinical Research Centre, Lund University, Malmö, Sweden.
Leif C GroopDepartment of Clinical Sciences, Clinical Research Centre, Lund University, Malmö, Sweden.
Line SletnerDepartment of Pediatric and Adolescents Medicine, Akershus University Hospital, Lørenskog, Norway.
Christine SommerDepartment of Endocrinology, Morbid Obesity and Preventive Medicine, Oslo University Hospital, Oslo, Norway.
Maria C MagnusCentre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway.
Håkon K GjessingCentre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway.
Jennifer R HarrisDepartment of Genetics and Bioinformatics, Norwegian Institute of Public Health, Oslo, Norway.
Per MagnusCentre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway.
Siri E HåbergCentre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway.
Astanand JugessurDepartment of Genetics and Bioinformatics, Norwegian Institute of Public Health, Oslo, Norway.
Jon BohlinCentre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway.
Norwegian Institute of Public Health · NOOslo University Hospital · NOLund University · SEUniversity of Oslo · NOTranslational Research Institute · AU

Funding

Norges Forskningsråd 262043Norges Forskningsråd 262700Norges Forskningsråd 287198
6 · The paper itself

Abstract

backgroundEpigenetic clocks have been recognized for their precise prediction of chronological age, age-related diseases, and all-cause mortality. Existing epigenetic clocks are based on CpGs from the Illumina HumanMethylation450 BeadChip (450 K) which has now been replaced by the latest platform, Illumina MethylationEPIC BeadChip (EPIC). Thus, it remains unclear to what extent EPIC contributes to increased precision and accuracy in the prediction of chronological age.

resultsWe developed three blood-based epigenetic clocks for human adults using EPIC-based DNA methylation (DNAm) data from the Norwegian Mother, Father and Child Cohort Study (MoBa) and the Gene Expression Omnibus (GEO) public repository: 1) an Adult Blood-based EPIC Clock (ABEC) trained on DNAm data from MoBa (n = 1592, age-span: 19 to 59 years), 2) an extended ABEC (eABEC) trained on DNAm data from MoBa and GEO (n = 2227, age-span: 18 to 88 years), and 3) a common ABEC (cABEC) trained on the same training set as eABEC but restricted to CpGs common to 450 K and EPIC. Our clocks showed high precision (Pearson correlation between chronological and epigenetic age (r) > 0.94) in independent cohorts, including GSE111165 (n = 15), GSE115278 (n = 108), GSE132203 (n = 795), and the Epigenetics in Pregnancy (EPIPREG) study of the STORK Groruddalen Cohort (n = 470). This high precision is unlikely due to the use of EPIC, but rather due to the large sample size of the training set.

conclusionsOur ABECs predicted adults' chronological age precisely in independent cohorts. As EPIC is now the dominant platform for measuring DNAm, these clocks will be useful in further predictions of chronological age, age-related diseases, and mortality.

Indexed as

DNA MethylationEpigenomicsAdolescentAdultAgedAged, 80 and overChildCohort StudiesCpG IslandsEpigenesis, GeneticFemaleHumansMiddle AgedPregnancyYoung AdultChronological ageDNA methylationEpigenetic ageIllumina MethylationEPIC BeadChipMoBa

Identifiers

PMID33109080
PMCPMC7590728
OpenAlexW3097290795

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.