Evidence map›Paper›PMID 33109024›Full record

ArticleJournal of the Royal Society, Interface2020

Dynamical Ising model of spatially coupled ecological oscillators.

Vahini Reddy Nareddy, Jonathan Machta, Karen C Abbott, Shadisadat Esmaeili, Alan Hastings

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Seasonality, density dependence, and spatial population synchrony.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vahini Reddy NareddyDepartment of Physics, University of Massachusetts, Amherst, MA 01003, USA.
Jonathan MachtaDepartment of Physics, University of Massachusetts, Amherst, MA 01003, USA.
Karen C AbbottDepartment of Biology, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH 44106, USA.
Shadisadat EsmaeiliDepartment of Environmental Science and Policy, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.
Alan HastingsSanta Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long-range synchrony from short-range interactions is a familiar pattern in biological and physical systems, many of which share a common set of 'universal' properties at the point of synchronization. Common biological systems of coupled oscillators have been shown to be members of the Ising universality class, meaning that the very simple Ising model replicates certain spatial statistics of these systems at stationarity. This observation is useful because it reveals which aspects of spatial pattern arise independently of the details governing local dynamics, resulting in both deeper understanding of and a simpler baseline model for biological synchrony. However, in many situations a system's dynamics are of greater interest than their static spatial properties. Here, we ask whether a dynamical Ising model can replicate universal and non-universal features of ecological systems, using noisy coupled metapopulation models with two-cycle dynamics as a case study. The standard Ising model makes unrealistic dynamical predictions, but the Ising model with memory corrects this by using an additional parameter to reflect the tendency for local dynamics to maintain their phase of oscillation. By fitting the two parameters of the Ising model with memory to simulated ecological dynamics, we assess the correspondence between the Ising and ecological models in several of their features (location of the critical boundary in parameter space between synchronous and asynchronous dynamics, probability of local phase changes and ability to predict future dynamics). We find that the Ising model with memory is reasonably good at representing these properties of ecological metapopulations. The correspondence between these models creates the potential for the simple and well-known Ising class of models to become a valuable tool for understanding complex biological systems.

Indexed as

EcosystemModels, Theoreticaldynamical Ising inferenceforecast skillIsing model with memorymetapopulationspatial synchrony

Identifiers

PMID33109024
PMCPMC7653388

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.