Evidence map›Paper›PMID 33108584›Full record

ArticleProtein & cell2022

Genomic and transcriptomic analysis unveils population evolution and development of pesticide resistance in fall armyworm Spodoptera frugiperda.

Furong Gui, Tianming Lan, Yue Zhao, Wei Guo, Yang Dong, Dongming Fang, Huan Liu, Haimeng Li, Hongli Wang, Ruoshi Hao and 34 more

Open access · diamondAbstract read
In one paragraph

Article in Protein & cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 145 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors at 12 institutions in 7 countries.

Furong Gui *State Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, Yunnan Agricultural University, Kunming, 650201, China.ORCID 0000-0002-8601-7334
Tianming Lan *State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China.ORCID 0000-0002-6934-0439
Yue Zhao *State Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, Yunnan Agricultural University, Kunming, 650201, China.ORCID 0000-0002-7613-9725
Wei Guo *State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.ORCID 0000-0001-9081-9754
Yang DongState Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, Yunnan Agricultural University, Kunming, 650201, China.
Dongming FangState Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Huan LiuState Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China.ORCID 0000-0003-3909-0931
Haimeng LiState Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Hongli WangState Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Ruoshi HaoYunnan Plateau Characteristic Agriculture Industry Research Institute, Kunming, 650201, China.
Xiaofang ChengMGI, BGI-Shenzhen, Shenzhen, 518083, China.
Yahong LiYunnan Plant Protection and Quarantine Station, Kunming, 650034, China.
Pengcheng YangBeijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, 100101, China.ORCID 0000-0001-5496-8357
Sunil Kumar SahuState Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China.ORCID 0000-0002-4742-9870
Yaping ChenState Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, Yunnan Agricultural University, Kunming, 650201, China.
Le ChengBGI-Yunnan, No. 389 Haiyuan Road, High-tech Development Zone, Kunming, 650106, China.
Shuqi HeState Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, Yunnan Agricultural University, Kunming, 650201, China.
Ping LiuMGI, BGI-Shenzhen, Shenzhen, 518083, China.
Guangyi FanBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Haorong LuChina National GeneBank, Jinsha Road, Dapeng New District, Shenzhen, 518120, China.
Guohai HuChina National GeneBank, Jinsha Road, Dapeng New District, Shenzhen, 518120, China.
Wei DongState Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Bin ChenState Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, Yunnan Agricultural University, Kunming, 650201, China.
Yuan JiangBGI-Americas, One Broadway, 14th Floor, Cambridge, MA, 02142, USA.
Yongwei ZhangBGI-Americas, One Broadway, 14th Floor, Cambridge, MA, 02142, USA.
Hanhong XuState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China.
Fei LinState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China.
Bernard SlippersDepartment of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa.
Alisa PostmaDepartment of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa.
Matthew JacksonDepartment of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa.
Birhan Addisie AbateEthiopian Biotechnology Institute, Addis Ababa, Ethiopia.
Kassahun TesfayeEthiopian Biotechnology Institute, Addis Ababa, Ethiopia.
Aschalew Lemma DemieEthiopian Biotechnology Institute, Addis Ababa, Ethiopia.
Meseret Destaw BayeleygneEthiopian Biotechnology Institute, Addis Ababa, Ethiopia.
Dawit Tesfaye DegefuMelkassa Agricultural Research Center, Ethiopian Institute of Agricultural Research, Melkassa, Addis Ababa, Ethiopia.
Feng ChenMGI, BGI-Shenzhen, Shenzhen, 518083, China.
Paul K KuriaKenya Agricultural and Livestock Research Organization, P.O. Box 57811, Nairobi, 00800, Kenya.
Zachary M KinyuaKenya Agricultural and Livestock Research Organization, P.O. Box 57811, Nairobi, 00800, Kenya.
Tong-Xian LiuCollege of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, 266109, China.
Huanming YangGuangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, 518120, China.
Fangneng HuangDepartment of Entomology, Louisiana State University Agricultural Center, Baton Rouge, LA, 70803, USA. FHuang@agcenter.lsu.edu.ORCID 0000-0003-0956-1958
Xin LiuState Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China. liuxin@genomics.cn.ORCID 0000-0003-3256-2940
Jun ShengState Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, Yunnan Agricultural University, Kunming, 650201, China. shengjunpuer@163.com.ORCID 0000-0002-8433-1864
Le KangState Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China. lkang@ioz.ac.cn.ORCID 0000-0003-4262-2329
BGI Group (China) · CNYunnan Agricultural University · CNEthiopian Biodiversity Institute · ETChinese Academy of Sciences · CNUniversity of Pretoria · ZAKenya Agricultural and Livestock Research Organization · KESouth China Agricultural University · CNUniversity of Copenhagen · DKEthiopian Institute of Agricultural Research · ETLouisiana State University Agricultural Center · USQingdao Agricultural University · CNYunnan Environmental Protection Bureau · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The fall armyworm (FAW), Spodoptera frugiperda, is a destructive pest native to America and has recently become an invasive insect pest in China. Because of its rapid spread and great risks in China, understanding of FAW genetic background and pesticide resistance is urgent and essential to develop effective management strategies. Here, we assembled a chromosome-level genome of a male FAW (SFynMstLFR) and compared re-sequencing results of the populations from America, Africa, and China. Strain identification of 163 individuals collected from America, Africa and China showed that both C and R strains were found in the American populations, while only C strain was found in the Chinese and African populations. Moreover, population genomics analysis showed that populations from Africa and China have close relationship with significantly genetic differentiation from American populations. Taken together, FAWs invaded into China were most likely originated from Africa. Comparative genomics analysis displayed that the cytochrome p450 gene family is extremely expanded to 425 members in FAW, of which 283 genes are specific to FAW. Treatments of Chinese populations with twenty-three pesticides showed the variant patterns of transcriptome profiles, and several detoxification genes such as AOX, UGT and GST specially responded to the pesticides. These findings will be useful in developing effective strategies for management of FAW in China and other invaded areas.

Indexed as

PesticidesTranscriptomeAnimalsChinaGenomicsHumansMaleSpodopteraPesticideschromosome-level genomecytochrome p450pesticidespopulation differentiationSpodoptera frugiperda

Identifiers

PMID33108584
PMCPMC9226219
OpenAlexW3096871261

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