Evidence map›Paper›PMID 33106663›Full record

ArticleNature chemical biology2021

Structural basis for persulfide-sensing specificity in a transcriptional regulator.

Daiana A Capdevila, Brenna J C Walsh, Yifan Zhang, Christopher Dietrich, Giovanni Gonzalez-Gutierrez, David P Giedroc

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
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  7. Frustration in physiology and molecular medicine.Molecular aspects of medicine · 2025
    Review
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  14. In the AlphaproteobacteriumAntioxidants (Basel, Switzerland) · 2023
    Article
  15. Review
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  17. Article
  18. Article
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  20. The Sulfide-Responsive SqrR/BigR Homologous Regulator YgaV ofAntioxidants (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Daiana A CapdevilaDepartment of Chemistry and Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA.ORCID http://orcid.org/0000-0002-0500-1016
Brenna J C WalshDepartment of Chemistry and Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA.
Yifan ZhangDepartment of Chemistry and Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA.
Christopher DietrichDepartment of Chemistry and Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA.
Giovanni Gonzalez-GutierrezDepartment of Chemistry and Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA.ORCID http://orcid.org/0000-0002-1044-943X
David P GiedrocDepartment of Chemistry and Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA. giedroc@indiana.edu.ORCID http://orcid.org/0000-0002-2342-1620
Indiana University Bloomington · USFundación Instituto Leloir · AR

Funding

Transition Metal Homeostasis and Reactive Sulfur Species in Bacterial PathogensR35GM118157 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI DAVID P. GIEDROC · 2016 to 2026
$5.9M
Graduate Training Program in Quantitative and Chemical Biology at Indiana University BloomingtonT32GM131994 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI JARED C LEWIS · 2019 to 2026
$2.4M
Graduate Program in Quantitative and Chemical Biology at Indiana University BloomT32GM109825 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI GIEDROC, DAVID P. · 2014 to 2018
$926k
NIGMS NIH HHS R35 GM118157NIGMS NIH HHS T32 GM109825NIGMS NIH HHS T32 GM131994
6 · The paper itself

Abstract

Cysteine thiol-based transcriptional regulators orchestrate the coordinated regulation of redox homeostasis and other cellular processes by 'sensing' or detecting a specific redox-active molecule, which in turn activates the transcription of a specific detoxification pathway. The extent to which these sensors are truly specific in cells for a singular class of reactive small-molecule stressors, for example, reactive oxygen or sulfur species, is largely unknown. Here, we report structural and mechanistic insights into the thiol-based transcriptional repressor SqrR, which reacts exclusively with oxidized sulfur species such as persulfides, to yield a tetrasulfide bridge that inhibits DNA operator-promoter binding. Evaluation of crystallographic structures of SqrR in various derivatized states, coupled with the results of a mass spectrometry-based kinetic profiling strategy, suggest that persulfide selectivity is determined by structural frustration of the disulfide form. These findings led to the identification of an uncharacterized repressor from the bacterial pathogen Acinetobacter baumannii as a persulfide sensor.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticAcinetobacter baumanniiAmino Acid SequenceBacterial ProteinsBinding SitesCloning, MolecularCrystallography, X-RayCysteineDisulfidesEscherichia coliGene ExpressionGenetic VectorsGlutathioneKineticsModels, MolecularBacterial ProteinsCysteineDisulfidesGlutathionepersulfidesQuinone ReductasesRecombinant Proteinssulfide quinone reductaseSulfidesSulfur

Identifiers

PMID33106663
PMCPMC7746634
OpenAlexW3093516866

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.