Evidence map›Paper›PMID 33106528›Full record

ArticleScientific reports2020

A physiologic overview of the organ-specific transcriptome of the cattle tick Rhipicephalus microplus.

Lucas Tirloni, Gloria Braz, Rodrigo Dutra Nunes, Ana Caroline Paiva Gandara, Larissa Rezende Vieira, Teresa Cristina Assumpcao, Gabriela Alves Sabadin, Renato Martins da Silva, Melina Garcia Guizzo, Josias Alves Machado and 18 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 58 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 2 countries.

Lucas TirloniCentro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Gloria BrazDepartamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Rodrigo Dutra NunesLaboratório de Bioquímica de Artrópodes Hematófagos, Instituto de Bioquímica Médica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Ana Caroline Paiva GandaraLaboratório de Bioquímica de Artrópodes Hematófagos, Instituto de Bioquímica Médica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Larissa Rezende VieiraDepartamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Teresa Cristina AssumpcaoVector Biology Section, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, Rockville, USA.
Gabriela Alves SabadinCentro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Renato Martins da SilvaInstituto de Biodiversidade e Sustentabilidade NUPEM, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Melina Garcia GuizzoLaboratório de Bioquímica de Artrópodes Hematófagos, Instituto de Bioquímica Médica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Josias Alves MachadoInstituto de Biodiversidade e Sustentabilidade NUPEM, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Evenilton Pessoa CostaInstituto de Biodiversidade e Sustentabilidade NUPEM, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Daniele SantosInstituto de Biodiversidade e Sustentabilidade NUPEM, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Helga Fernandes GomesInstituto de Biodiversidade e Sustentabilidade NUPEM, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Jorge MoraesInstituto de Biodiversidade e Sustentabilidade NUPEM, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Maria Beatriz Dos Santos MotaDepartamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Rafael Dias MesquitaDepartamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Milane de Souza LeiteLaboratório de Bioquímica de Artrópodes Hematófagos, Instituto de Bioquímica Médica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Patricia Hessab AlvarengaLaboratorio de Bioquímica de Resposta ao Estresse, Instituto de Bioquímica Médica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Flavio Alves LaraLaboratório de Microbiologia Celular, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Adriana SeixasDepartamento de Farmacociências, Universidade Federal de Ciências da Saúde de Porto Alegre, Porto Alegre, RS, Brazil.
Rodrigo Nunes da FonsecaInstituto de Biodiversidade e Sustentabilidade NUPEM, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Andrea C FogaçaDepartamento de Parasitologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil.
Carlos LogulloInstituto de Biodiversidade e Sustentabilidade NUPEM, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Aparecida Sadae TanakaDepartamento de Bioquímica, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, SP, Brazil.
Sirlei DaffreDepartamento de Parasitologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil.
Pedro L OliveiraLaboratório de Bioquímica de Artrópodes Hematófagos, Instituto de Bioquímica Médica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Itabajara da Silva VazCentro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil. Itabajara.vaz@ufrgs.br.
José M C RibeiroVector Biology Section, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, Rockville, USA.
Universidade Federal do Rio de Janeiro · BRInstituto Nacional de Ciência e Tecnologia em Entomologia Molecular · BRNational Institute of Allergy and Infectious Diseases · USUniversidade de São Paulo · BRUniversidade Federal do Rio Grande do Sul · BRFundação Oswaldo Cruz · BRUniversidade Federal de São Paulo · BR

Funding

Vector-Borne Diseases: Biology Of Vector Host RelationshipZ01AI000810 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI RIBEIRO, JOSE M · 1997 to 2008
$3.5M
Intramural NIH HHS Z01 AI000810Intramural NIH HHS Z01 AI000810-20
6 · The paper itself

Abstract

To further obtain insights into the Rhipicephalus microplus transcriptome, we used RNA-seq to carry out a study of expression in (i) embryos; (ii) ovaries from partially and fully engorged females; (iii) salivary glands from partially engorged females; (iv) fat body from partially and fully engorged females; and (v) digestive cells from partially, and (vi) fully engorged females. We obtained > 500 million Illumina reads which were assembled de novo, producing > 190,000 contigs, identifying 18,857 coding sequences (CDS). Reads from each library were mapped back into the assembled transcriptome giving a view of gene expression in different tissues. Transcriptomic expression and pathway analysis showed that several genes related in blood digestion and host-parasite interaction were overexpressed in digestive cells compared with other tissues. Furthermore, essential genes for the cell development and embryogenesis were overexpressed in ovaries. Taken altogether, these data offer novel insights into the physiology of production and role of saliva, blood digestion, energy metabolism, and development with submission of 10,932 novel tissue/cell specific CDS to the NCBI database for this important tick species.

Indexed as

Gene Regulatory NetworksAnimalsCattleFemaleGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingOrgan SpecificityOvaryPregnancyRhipicephalusSalivaSequence Analysis, RNA

Identifiers

PMID33106528
PMCPMC7588415
OpenAlexW3093880177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.