Evidence map›Paper›PMID 33106503›Full record

ArticleNPJ systems biology and applications2020

ROS networks: designs, aging, Parkinson's disease and precision therapies.

Alexey N Kolodkin, Raju Prasad Sharma, Anna Maria Colangelo, Andrew Ignatenko, Francesca Martorana, Danyel Jennen, Jacco J Briedé, Nathan Brady, Matteo Barberis, Thierry D G A Mondeel and 7 more

Open access · goldAbstract read
In one paragraph

Article in NPJ systems biology and applications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 84 citations in OpenAlex.

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  14. ROS-Responsive 4D Printable Acrylic Thioether-Based Hydrogels for Smart Drug Release.Chemistry of materials : a publication of the American Chemical Society · 2024
    Article
  15. Article
  16. Real-timeBiomedical optics express · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 7 countries.

Alexey N KolodkinInfrastructure for Systems Biology Europe (ISBE.NL), Amsterdam, The Netherlands. alexeykolodkin@gmail.com.ORCID 0000-0002-7466-5027
Raju Prasad SharmaMolecular Cell Physiology, VU University Amsterdam, Amsterdam, The Netherlands.
Anna Maria ColangeloInfrastructure for Systems Biology Europe (ISBE.IT), Milan, Italy.
Andrew IgnatenkoLuxembourg Institute of Science and Technology (LIST), Esch-sur-Alzette, Luxembourg.
Francesca MartoranaInfrastructure for Systems Biology Europe (ISBE.IT), Milan, Italy.
Danyel JennenDepartment of Toxicogenomics, GROW School for Oncology and Developmental Biology, Maastricht University, Maastricht, The Netherlands.
Jacco J BriedéDepartment of Toxicogenomics, GROW School for Oncology and Developmental Biology, Maastricht University, Maastricht, The Netherlands.
Nathan BradyDepartment of Molecular Microbiology & Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.ORCID 0000-0002-1901-5996
Matteo BarberisSynthetic Systems Biology and Nuclear Organization, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0001-5640-7422
Thierry D G A MondeelSynthetic Systems Biology and Nuclear Organization, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Michele PapaSysBio Centre of Systems Biology (ISBE.IT), University of Milano-Bicocca, Milan, Italy.ORCID 0000-0002-6609-7453
Vikas KumarEnvironmental Engineering Laboratory, Departament d'Enginyeria Quimica, Universitat Rovira i Virgili, Tarragona, Spain.ORCID 0000-0002-9795-5967
Bernhard PetersFaculty of Science, Technology and Communication, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Alexander SkupinLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.ORCID 0000-0002-8955-8304
Lilia AlberghinaInfrastructure for Systems Biology Europe (ISBE.IT), Milan, Italy.ORCID 0000-0003-1694-931X
Rudi BallingLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.ORCID 0000-0003-2902-5650
Hans V WesterhoffInfrastructure for Systems Biology Europe (ISBE.NL), Amsterdam, The Netherlands. h.v.westerhoff@uva.nl.
University of Luxembourg · LUUniversity of Milano-Bicocca · ITMaastricht University · NLUniversity of Surrey · GBInstitut de Recerca Biomèdica Catalunya Sud · ESJohns Hopkins University · USLuxembourg Institute of Science and Technology · LUUniversitat Rovira i Virgili · ESUniversity of Campania "Luigi Vanvitelli" · ITUniversity of Manchester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C008219/1Biotechnology and Biological Sciences Research Council BB/F003528/1Biotechnology and Biological Sciences Research Council BB/G530225/1Biotechnology and Biological Sciences Research Council BB/I004688/1Biotechnology and Biological Sciences Research Council BB/I004696/1Biotechnology and Biological Sciences Research Council BB/I00470X/1Biotechnology and Biological Sciences Research Council BB/I017186/1Biotechnology and Biological Sciences Research Council BB/J003883/1Biotechnology and Biological Sciences Research Council BB/J020060/1Biotechnology and Biological Sciences Research Council BB/J500422/1
6 · The paper itself

Abstract

How the network around ROS protects against oxidative stress and Parkinson's disease (PD), and how processes at the minutes timescale cause disease and aging after decades, remains enigmatic. Challenging whether the ROS network is as complex as it seems, we built a fairly comprehensive version thereof which we disentangled into a hierarchy of only five simpler subnetworks each delivering one type of robustness. The comprehensive dynamic model described in vitro data sets from two independent laboratories. Notwithstanding its five-fold robustness, it exhibited a relatively sudden breakdown, after some 80 years of virtually steady performance: it predicted aging. PD-related conditions such as lack of DJ-1 protein or increased α-synuclein accelerated the collapse, while antioxidants or caffeine retarded it. Introducing a new concept (aging-time-control coefficient), we found that as many as 25 out of 57 molecular processes controlled aging. We identified new targets for "life-extending interventions": mitochondrial synthesis, KEAP1 degradation, and p62 metabolism.

Indexed as

AgingModels, BiologicalPrecision MedicineComputational BiologyHumansMolecular Targeted TherapyOxidative StressParkinson DiseaseReactive Oxygen SpeciesReactive Oxygen Species

Identifiers

PMID33106503
PMCPMC7589522
OpenAlexW3123754262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.