ArticleScientific data2020
Genome-wide identification of accessible chromatin regions in bumblebee by ATAC-seq.
Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Genome Evolution in Social Insects.Genome biology and evolution · 2026Review
- Large-scale Genome Analyses Provide Insights into Hymenoptera Evolution.Molecular biology and evolution · 2025Article
- N-alpha-acetyltransferase 40 modulates ecdysteroid action through chromatin accessibility changes near the promoters of 20-hydroxyecdysone response genes in Tribolium Castaneum TcA cells.Insect biochemistry and molecular biology · 2025Article
- Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum.Development (Cambridge, England) · 2024Article
- Investigation of sex expression profiles and the cantharidin biosynthesis genes in two blister beetles.PloS one · 2023Article
- Genome-wide identification of accessible chromatin regions in bumblebee by ATAC-seq.Scientific data · 2020Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
Bumblebees (Hymenoptera: Apidae) are important pollinating insects that play pivotal roles in crop production and natural ecosystem services. Although protein-coding genes in bumblebees have been extensively annotated, regulatory sequences of the genome, such as promoters and enhancers, have been poorly annotated. To achieve a comprehensive profile of accessible chromatin regions and provide clues for all possible regulatory elements in the bumblebee genome, we performed ATAC-seq (Assay for Transposase-Accessible Chromatin with high-throughput sequencing) on Bombus terrestris samples derived from four developmental stages: egg, larva, pupa, and adult, respectively. The ATAC-seq reads were mapped to the B. terrestris reference genome, and its accessible chromatin regions were identified and characterized using bioinformatic methods. We identified 36,390 chromatin accessible regions in total, including both shared and stage-specific chromatin accessible signals. Our study will provide an important resource, not only for uncovering regulatory elements in the bumblebee genome, but also for expanding our understanding of bumblebee biology throughout development.
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Registered trials
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