Evidence map›Paper›PMID 33106423›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Identification of a degradation signal at the carboxy terminus of SREBP2: A new role for this domain in cholesterol homeostasis.

Daniel L Kober, Shimeng Xu, Shili Li, Bilkish Bajaj, Guosheng Liang, Daniel M Rosenbaum, Arun Radhakrishnan

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Daniel L KoberDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0001-8657-9348
Shimeng XuDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0001-7988-9284
Shili LiDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0002-5483-7506
Bilkish BajajDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Guosheng LiangDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Daniel M RosenbaumDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390; dan.rosenbaum@utsouthwestern.edu arun.radhakrishnan@utsouthwestern.edu.ORCID 0000-0002-7174-4993
Arun RadhakrishnanDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX 75390; dan.rosenbaum@utsouthwestern.edu arun.radhakrishnan@utsouthwestern.edu.ORCID 0000-0002-7266-7336
The University of Texas Southwestern Medical Center · US

Funding

TRANSCRIPTIONAL REGULATION OF LDL RECEPTOR PROMOTERP01HL020948 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI GOLDSTEIN, JOSEPH L · 1985 to 2021
$103.1M
Structural mechanisms of Scap/SREBP signaling in membrane homeostasisR35GM136387 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Daniel Rosenbaum · 2020 to 2026
$3.0M
NHLBI NIH HHS P01 HL020948NIGMS NIH HHS R35 GM136387
6 · The paper itself

Abstract

Lipid homeostasis in animal cells is maintained by sterol regulatory element-binding proteins (SREBPs), membrane-bound transcription factors whose proteolytic activation requires the cholesterol-sensing membrane protein Scap. In endoplasmic reticulum (ER) membranes, the carboxyl-terminal domain (CTD) of SREBPs binds to the CTD of Scap. When cholesterol levels are low, Scap escorts SREBPs from the ER to the Golgi, where the actions of two proteases release the amino-terminal domains of SREBPs that travel to the nucleus to up-regulate expression of lipogenic genes. The CTD of SREBP remains bound to Scap but must be eliminated so that Scap can be recycled to bind and transport additional SREBPs. Here, we provide insights into how this occurs by performing a detailed molecular dissection of the CTD of SREBP2, one of three SREBP isoforms expressed in mammals. We identify a degradation signal comprised of seven noncontiguous amino acids encoded in exon 19 that mediates SREBP2's proteasomal degradation in the absence of Scap. When bound to the CTD of Scap, this signal is masked and SREBP2 is stabilized. Binding to Scap requires an arginine residue in exon 18 of SREBP2. After SREBP2 is cleaved in Golgi, its CTD remains bound to Scap and returns to the ER with Scap where it is eliminated by proteasomal degradation. The Scap-binding motif, but not the degradation signal, is conserved in SREBP1. SREBP1's stability is determined by a degradation signal in a different region of its CTD. These findings highlight a previously unknown role for the CTD of SREBPs in regulating SREBP activity.

Indexed as

Sterol Regulatory Element Binding Protein 2Amino Acid MotifsAnimalsCholesterolEndoplasmic ReticulumGolgi ApparatusHumansIntracellular Signaling Peptides and ProteinsMembrane ProteinsProteasome Endopeptidase ComplexProtein BindingProtein DomainsProteolysisCholesterolIntracellular Signaling Peptides and ProteinsMembrane ProteinsProteasome Endopeptidase ComplexSREBF2 protein, humanSREBP cleavage-activating proteinSterol Regulatory Element Binding Protein 2cholesterolendoplasmic reticulumGolgiproteasomeScap

Identifiers

PMID33106423
PMCPMC7668084
OpenAlexW3093530554

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.