Evidence map›Paper›PMID 33105034›Full record

ArticleThe New phytologist2021

Agrobacterium T-DNA integration in somatic cells does not require the activity of DNA polymerase θ.

Ayako Nishizawa-Yokoi, Hiroaki Saika, Naho Hara, Lan-Ying Lee, Seiichi Toki, Stanton B Gelvin

Open access · greenAbstract read
In one paragraph

Article in The New phytologist, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Plant tolerance mechanisms to DNA-damaging UV stress.Journal of experimental botany · 2025
    Review
  6. Manipulating alternative end-joining alters carbon-ion beam-induced genome mutation profiles in Arabidopsis thaliana.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Genomic consequences associated with Agrobacterium-mediated transformation of plants.The Plant journal : for cell and molecular biology · 2024
    Review
  11. Precise genetic engineering withPlant biotechnology (Tokyo, Japan) · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Optimization ofFrontiers in plant science · 2023
    Article
  16. Genome Protection by DNA Polymerase θ.Annual review of genetics · 2022
    Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Ayako Nishizawa-YokoiInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, 305-8634, Japan.ORCID 0000-0003-2781-1359
Hiroaki SaikaInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, 305-8634, Japan.ORCID 0000-0002-0716-2518
Naho HaraInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, 305-8634, Japan.
Lan-Ying LeeDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907-1392, USA.ORCID 0000-0002-8611-9197
Seiichi TokiInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, 305-8634, Japan.ORCID 0000-0003-0066-6446
Stanton B GelvinDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907-1392, USA.ORCID 0000-0002-1603-3734
National Agriculture and Food Research Organization · JPPurdue University West Lafayette · USKihara Institute for Biological Research · JP

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI John Tesmer · 1985 to 2026
$43.4M
NCI NIH HHS P30 CA023168
6 · The paper itself

Abstract

Integration of Agrobacterium tumefaciens transferred DNA (T-DNA) into the plant genome is the last step required for stable plant genetic transformation. The mechanism of T-DNA integration remains controversial, although scientists have proposed the participation of various nonhomologous end-joining (NHEJ) pathways. Recent evidence suggests that in Arabidopsis, DNA polymerase θ (PolQ) may be a crucial enzyme involved in T-DNA integration. We conducted quantitative transformation assays of wild-type and polQ mutant Arabidopsis and rice, analyzed T-DNA/plant DNA junction sequences, and (for Arabidopsis) measured the amount of integrated T-DNA in mutant and wild-type tissue. Unexpectedly, we were able to generate stable transformants of all tested lines, although the transformation frequency of polQ mutants was c. 20% that of wild-type plants. T-DNA/plant DNA junctions from these transformed rice and Arabidopsis polQ mutants closely resembled those from wild-type plants, indicating that loss of PolQ activity does not alter the characteristics of T-DNA integration events. polQ mutant plants show growth and developmental defects, perhaps explaining previous unsuccessful attempts at their stable transformation. We suggest that either multiple redundant pathways function in T-DNA integration, and/or that integration requires some yet unknown pathway.

Indexed as

ArabidopsisAgrobacterium tumefaciensDNA, BacterialDNA-Directed DNA PolymeraseDNA Polymerase thetaPlants, Genetically ModifiedTransformation, GeneticDNA, BacterialDNA-Directed DNA PolymeraseDNA Polymerase thetaAgrobacterium-mediated plant transformationArabidopsis thalianaDNA polymerase θOryza sativa (rice)T-DNA integrationT-DNA junction sequences

Identifiers

PMID33105034
PMCPMC12009616
OpenAlexW3094238677

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.