Evidence map›Paper›PMID 33104763›Full record

ArticlePLoS pathogens2020

Effector prediction and characterization in the oomycete pathogen Bremia lactucae reveal host-recognized WY domain proteins that lack the canonical RXLR motif.

Kelsey J Wood, Munir Nur, Juliana Gil, Kyle Fletcher, Kim Lakeman, Dasan Gann, Ayumi Gothberg, Tina Khuu, Jennifer Kopetzky, Sanye Naqvi and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Annotation of RxLR Effectors in Oomycete Genomes.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Genome-Wide Characterization of Effector Protein-Encoding Genes inJournal of fungi (Basel, Switzerland) · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 3 countries.

Kelsey J WoodThe Genome Center, University of California, Davis, Davis, California, United States of America.ORCID 0000-0001-5725-9222
Munir NurThe Genome Center, University of California, Davis, Davis, California, United States of America.ORCID 0000-0001-6766-0597
Juliana GilThe Genome Center, University of California, Davis, Davis, California, United States of America.ORCID 0000-0002-9042-7459
Kyle FletcherThe Genome Center, University of California, Davis, Davis, California, United States of America.ORCID 0000-0003-1191-9939
Kim LakemanEnza Zaden, Enkhuizen, The Netherlands.
Dasan GannThe Genome Center, University of California, Davis, Davis, California, United States of America.
Ayumi GothbergThe Genome Center, University of California, Davis, Davis, California, United States of America.ORCID 0000-0001-9530-8793
Tina KhuuThe Genome Center, University of California, Davis, Davis, California, United States of America.
Jennifer KopetzkyThe Genome Center, University of California, Davis, Davis, California, United States of America.ORCID 0000-0002-5040-9977
Sanye NaqviThe Genome Center, University of California, Davis, Davis, California, United States of America.ORCID 0000-0003-2369-8109
Archana PandyaThe Genome Center, University of California, Davis, Davis, California, United States of America.
Chi ZhangThe Genome Center, University of California, Davis, Davis, California, United States of America.
Brigitte MaisonneuveINRAE, UR1052, GAFL, Montfavet, France.ORCID 0000-0002-8665-6304
Mathieu PelEnza Zaden, Enkhuizen, The Netherlands.
Richard MichelmoreThe Genome Center, University of California, Davis, Davis, California, United States of America.ORCID 0000-0002-7512-592X
University of California, Irvine · USInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pathogens that infect plants and animals use a diverse arsenal of effector proteins to suppress the host immune system and promote infection. Identification of effectors in pathogen genomes is foundational to understanding mechanisms of pathogenesis, for monitoring field pathogen populations, and for breeding disease resistance. We identified candidate effectors from the lettuce downy mildew pathogen Bremia lactucae by searching the predicted proteome for the WY domain, a structural fold found in effectors that has been implicated in immune suppression as well as effector recognition by host resistance proteins. We predicted 55 WY domain containing proteins in the genome of B. lactucae and found substantial variation in both sequence and domain architecture. These candidate effectors exhibit several characteristics of pathogen effectors, including an N-terminal signal peptide, lineage specificity, and expression during infection. Unexpectedly, only a minority of B. lactucae WY effectors contain the canonical N-terminal RXLR motif, which is a conserved feature in the majority of cytoplasmic effectors reported in Phytophthora spp. Functional analysis of 21 effectors containing WY domains revealed 11 that elicited cell death on wild accessions and domesticated lettuce lines containing resistance genes, indicative of recognition of these effectors by the host immune system. Only two of the 11 recognized effectors contained the canonical RXLR motif, suggesting that there has been an evolutionary divergence in sequence motifs between genera; this has major consequences for robust effector prediction in oomycete pathogens.

Indexed as

Amino Acid SequenceDisease ResistanceGenomeHost-Pathogen InteractionsLactucaOomycetesPhytophthora infestansPlant DiseasesPlant ProteinsProtein Sorting SignalsSequence AlignmentPlant ProteinsProtein Sorting Signals

Identifiers

PMID33104763
PMCPMC7644090
OpenAlexW3094225639

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.