Evidence map›Paper›PMID 33104733›Full record

ArticlePloS one2020

Molecular characterization of invasive Enterobacteriaceae from pediatric patients in Central and Northwestern Nigeria.

Carissa Duru, Grace Olanipekun, Vivian Odili, Nicholas Kocmich, Amy Rezac, Theresa O Ajose, Nubwa Medugu, Dominic Umoru, Chukwuma Onuchukwu, Huda Munir and 8 more

Abstract readMulticenter Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Whole-genome sequencing revealsMicrobial genomics · 2025
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  10. The Prevalence of UndiagnosedPathogens (Basel, Switzerland) · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Carissa DuruInternational Foundation Against Infectious Diseases in Nigeria, Abuja, Nigeria.ORCID 0000-0002-8216-8805
Grace OlanipekunInternational Foundation Against Infectious Diseases in Nigeria, Abuja, Nigeria.
Vivian OdiliInternational Foundation Against Infectious Diseases in Nigeria, Abuja, Nigeria.
Nicholas KocmichDepartment of Pediatric Infectious Diseases, University of Nebraska Medical Center, Omaha, Nebraska, United States of America.
Amy RezacDepartment of Pediatric Infectious Diseases, University of Nebraska Medical Center, Omaha, Nebraska, United States of America.
Theresa O AjoseInternational Foundation Against Infectious Diseases in Nigeria, Abuja, Nigeria.
Nubwa MeduguDepartment of Medical Microbiology and Parasitology, National Hospital Abuja, International Foundation Against Infectious Diseases in Nigeria, Abuja, Nigeria.
Dominic UmoruMaitama District Hospital, Abuja, Nigeria.
Chukwuma OnuchukwuFederal Medical Centre, Keffi, Nigeria.
Huda MunirAminu Kano Teaching Hospital, Kano, Nigeria.
Binta Wudil JibirHasiya Bayero Paediatric Hospital, Kano, Nigeria.
Zubaida FaroukAminu Kano Teaching Hospital, Kano, Nigeria.
Safiya GamboMurtala Muhammed Specialist Hospital, Kano, Nigeria.
Fatimah Hassan-HangaAminu Kano Teaching Hospital, Kano, Nigeria.
Rasaq OlaosebikanInternational Foundation Against Infectious Diseases in Nigeria, Abuja, Nigeria.
Bernard EbrukeInternational Foundation Against Infectious Diseases in Nigeria, Abuja, Nigeria.
Charles EsimoneNnamdi Azikiwe University, Awka, Nigeria.
Stephen ObaroDepartment of Pediatric Infectious Diseases, University of Nebraska Medical Center, Omaha, Nebraska, United States of America.

Funding

Global Genomic and Proteomic Profiling of African Children with Typhoid FeverR01AI097493 · NIAID · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI OBARO, STEPHEN · 2012 to 2015
$1.6M
NIAID NIH HHS R01 AI097493
6 · The paper itself

Abstract

backgroundBacteremia is a leading cause of mortality in developing countries, however, etiologic evaluation is infrequent and empiric antibiotic use not evidence-based. Here, we evaluated the patterns of ESBL resistance in children enrolled into a surveillance study for community acquired bacteremic syndromes across health facilities in Central and Northwestern Nigeria.

methodBlood culture was performed for children aged less than 5 years suspected of having sepsis from Sept 2008-Dec 2016. Blood was incubated using the BACTEC00AE system and Enterobacteriacea identified to the species level using Analytical Profile Index (API20E®). Antibiotic susceptibility profile was determined by the disc diffusion method. Real time PCR was used to characterize genes responsible for ESBL production.

resultOf 21,000 children screened from Sept 2008-Dec 2016, 2,625(12.5%) were culture-positive. A total of 413 Enterobacteriaceae available for analysis were screened for ESBL. ESBL production was detected in 160 Enterobacteriaceae, high resistance rates were observed among ESBL-positive isolates for Ceftriaxone (92.3%), Aztreonam (96.8%), Cefpodoxime (96.3%), Cefotaxime (98.8%) and Trimethoprim/sulfamethoxazole (90%), while 87.5%, 90.7%, and 91.9% of the isolates were susceptible to Imipenem, Amikacin and Meropenem respectively. Frequently detected resistance genes were blaTEM-83.8% (134/160), and, blaCTX-M 83.1% (133/160) followed by blaSHVgenes 66.3% (106/160). Co-existence of blaCTX-M, blaTEM and blaSHV was seen in 94/160 (58.8%), blaCTX-M and blaTEM in 118/160 (73.8%), blaTEM and blaSHV in 97/160 (60.6%) and blaCTX-M and blaSHV in 100/160 (62.5%) of isolates tested.

conclusionOur results indicate a high prevalence of bacteremia from ESBL Enterobacteriaceae in this population of children. These are resistant to commonly used antibiotics and careful choice of antibiotic treatment options is critical. Further studies to evaluate transmission dynamics of resistance genes could help in the reduction of ESBL resistance in these settings.

Indexed as

beta-Lactam ResistanceAnti-Bacterial AgentsBacteremiaChild, PreschoolDisk Diffusion Antimicrobial TestsEnterobacteriaceaeEnterobacteriaceae InfectionsEvidence-Based MedicineFemaleHumansInfantIntroduced SpeciesMaleNigeriaPopulation SurveillancePrevalenceAnti-Bacterial Agents

Identifiers

PMID33104733
PMCPMC7588054

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.