Evidence map›Paper›PMID 33101609›Full record

ArticleComputational and structural biotechnology journal2020

Iron deficiency triggered transcriptome changes in bread wheat.

Meng Wang, Jiazhen Gong, Navreet K Bhullar

Open access · goldAbstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

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  7. International journal of molecular sciences · 2023
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  10. Overexpression ofInternational journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Meng WangSchool of Life Sciences, University of Science and Technology of China, Hefei, China.
Jiazhen GongSchool of Life Sciences, University of Science and Technology of China, Hefei, China.
Navreet K BhullarInstitute of Molecular Plant Biology, Department of Biology, ETH Zurich (Swiss Federal Institute of Technology), Zurich, Switzerland.
University of Science and Technology of China · CNETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A series of complex transport, storage and regulation mechanisms control iron metabolism and thereby maintain iron homeostasis in plants. Despite several studies on iron deficiency responses in different plant species, these mechanisms remain unclear in the allohexaploid wheat, which is the most widely cultivated commercial crop. We used RNA sequencing to reveal transcriptomic changes in the wheat flag leaves and roots, when subjected to iron limited conditions. We identified 5969 and 2591 differentially expressed genes (DEGs) in the flag leaves and roots, respectively. Genes involved in the synthesis of iron ligands i.e., nicotianamine (NA) and deoxymugineic acid (DMA) were significantly up-regulated during iron deficiency. In total, 337 and 635 genes encoding transporters exhibited altered expression in roots and flag leaves, respectively. Several genes related to

Indexed as

3-HMA, 3-hydroxymugineic acidABC, ATP-BINDING CASSETTEACC, 1-aminocyclopropane-1-carboxylateAEC, AUXIN EFFLUX CARRIERAOC, ALLENE OXIDE CYCLASEAOS, ALLENE OXIDE SYNTHASEAQP, AQUAPORINAVA, avenic acidbHLH, BASIC HELIX-LOOP-HELIXbZIP, BASIC LEUCINE ZIPPERDEGs, differentially expressed genesDMA, deoxymugineic acidDMAS, DEOXYMUGINEIC ACID SYNTHASEDPA, days post anthesisepiHDMA, 3-epihydroxy-2′-deoxymugineic acidepiHMA, 3-epihydroxymugineic acidERF, ETHYLENE-RESPONSIVE FACTORFAD, FATTY ACID DESATURASEFDR, false discovery rateFIT, FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTORFRO, FERRIC REDUCTASE OXIDASEGCN, gene co-expression networkGO, Gene ontologyGSH, GLUTATHIONEHC, high confidenceHMA, HEAVY METAL-ASSOCIATEDIDEF, IDE BINDING FACTORIDE, iron deficiency-responsive cis-acting elementIHW, independent hypothesis weightingILR3, IAA‐LEUCINE RESISTANT3IREG/FPN, IRON REGULATED PROTEIN/FERROPORTINIron deficiencyIron, FeIRT1, IRON-REGULATED TRANSPORTERJAs, jasmonatesJMT, JASMONATE O-METHYLTRANSFERASEKAT, 3-KETOACYL-COA THIOLASELOX, LIPOXYGENASEMA, mugineic acidMATE, MULTI ANTIMICROBIAL EXTRUSION PROTEINMFS, MAJOR FACILITATOR SUPERFAMILYMRP, MULTIDRUG RESISTANCE PROTEINMT, METALLOTHIONEINNAAT, NICOTIANAMINE AMINOTRANSFERASENAC, NO APICAL MERISTEM (NAM)/ARABIDOPSIS TRANSCRIPTION ACTIVATION FACTOR (ATAF)/CUP-SHAPED COTYLEDON (CUC)NA, nicotianamineNAS, NICOTIANAMINE SYNTHASENRAMP, NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEINNRT1/PTR, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTEROPCL, 4-COUMARATE COA LIGASEOPR, 12-OXOPHYTODIENOATE REDUCTASEOPT, OLIGOPEPTIDE TRANSPORTERPDR, PLEIOTROPIC DRUG RESISTANCEPLA, PHOSPHOLIPASE A1PRI, POSITIVE REGULATOR OF IRON DEFICIENCY RESPONSEPSs, phytosiderophoresPT, peptide transportPYE, POPEYERNA sequencingSAM, S-adenosyl-L-methionineSAMS, S-ADENOSYL-L-METHIONINE SYNTHETASESLC40A1, SOLUTE CARRIER FAMILY 40 MEMBER 1SWEET, SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERSTOM, TRANSPORTER OF MUGINEIC ACIDTranscriptomic profilesVIT, VACUOLAR IRON TRANSPORTERWheatYSL, YELLOW STRIPE LIKEZIFL, ZINC INDUCED FACILITATOR-LIKEZIP, ZINC/IRON PERMEASE

Identifiers

PMID33101609
PMCPMC7550799
OpenAlexW3087181791

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.