Evidence map›Paper›PMID 33101224›Full record

ArticleFrontiers in microbiology2020

Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans.

Chang Jae Choi, Valeria Jimenez, David M Needham, Camille Poirier, Charles Bachy, Harriet Alexander, Susanne Wilken, Francisco P Chavez, Sebastian Sudek, Stephen J Giovannoni and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 50 citations in OpenAlex.

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  8. 3D intrusions transport active surface microbial assemblages to the dark ocean.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Choanoflagellates alongside diverse uncultured predatory protists consume the abundant open-ocean cyanobacteriumProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Frontiers in microbiology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Chang Jae ChoiOcean EcoSystems Biology Unit, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
Valeria JimenezMonterey Bay Aquarium Research Institute, Moss Landing, CA, United States.
David M NeedhamOcean EcoSystems Biology Unit, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
Camille PoirierOcean EcoSystems Biology Unit, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
Charles BachyOcean EcoSystems Biology Unit, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
Harriet AlexanderMonterey Bay Aquarium Research Institute, Moss Landing, CA, United States.
Susanne WilkenMonterey Bay Aquarium Research Institute, Moss Landing, CA, United States.
Francisco P ChavezMonterey Bay Aquarium Research Institute, Moss Landing, CA, United States.
Sebastian SudekMonterey Bay Aquarium Research Institute, Moss Landing, CA, United States.
Stephen J GiovannoniDepartment of Microbiology, Oregon State University, Corvallis, OR, United States.
Alexandra Z WordenOcean EcoSystems Biology Unit, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
GEOMAR Helmholtz Centre for Ocean Research Kiel · DEMonterey Bay Aquarium Research Institute · USOregon State University · USUniversity of Amsterdam · NLWoods Hole Oceanographic Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Much is known about how broad eukaryotic phytoplankton groups vary according to nutrient availability in marine ecosystems. However, genus- and species-level dynamics are generally unknown, although important given that adaptation and acclimation processes differentiate at these levels. We examined phytoplankton communities across seasonal cycles in the North Atlantic (BATS) and under different trophic conditions in the eastern North Pacific (ENP), using phylogenetic classification of plastid-encoded 16S rRNA amplicon sequence variants (ASVs) and other methodologies, including flow cytometric cell sorting. Prasinophytes dominated eukaryotic phytoplankton amplicons during the nutrient-rich deep-mixing winter period at BATS. During stratification ('summer') uncultured dictyochophytes formed ∼35 ± 10% of all surface plastid amplicons and dominated those from stramenopile algae, whereas diatoms showed only minor, ephemeral contributions over the entire year. Uncultured dictyochophytes also comprised a major fraction of plastid amplicons in the oligotrophic ENP. Phylogenetic reconstructions of near-full length 16S rRNA sequences established 11 uncultured Dictyochophyte Environmental Clades (DEC). DEC-I and DEC-VI dominated surface dictyochophytes under stratification at BATS and in the ENP, and DEC-IV was also important in the latter. Additionally, although less common at BATS,

Indexed as

chloroplast genomedictyochophytesphytoplankton diversitysingle-cell genomicstime-series

Identifiers

PMID33101224
PMCPMC7554337
OpenAlexW3090630326

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.