Evidence map›Paper›PMID 33098466›Full record

ArticleMarine biotechnology (New York, N.Y.)2020

Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans.

Masa-Aki Yoshida, Junichi Imoto, Yuri Kawai, Satomi Funahashi, Ryuhei Minei, Yuki Akizuki, Atsushi Ogura, Kazuhiko Nakabayashi, Kei Yura, Kazuho Ikeo

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Masa-Aki YoshidaMarine Biological Science Section, Education and Research Center for Biological Resources, Faculty of Life and Environmental Sciences, Shimane University, Oki, Japan. mayoshida@life.shimane-u.ac.jp.ORCID http://orcid.org/0000-0002-5221-0320
Junichi ImotoDepartment of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Japan.
Yuri KawaiGraduate School of Humanities and Sciences, Ochanomizu University, Tokyo, Japan.
Satomi FunahashiGraduate School of Humanities and Sciences, Ochanomizu University, Tokyo, Japan.
Ryuhei MineiDepartment of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan.
Yuki AkizukiDepartment of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan.
Atsushi OguraDepartment of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan.
Kazuhiko NakabayashiDepartment of Maternal-Fetal Biology, Research Institute, National Center for Child Health and Development, Tokyo, Japan.
Kei YuraGraduate School of Humanities and Sciences, Ochanomizu University, Tokyo, Japan. yura.kei@aoni.waseda.jp.
Kazuho IkeoDepartment of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Japan.
Nagahama Institute of Bio-Science and Technology · JPNational Institute of Genetics · JPOchanomizu University · JPNational Center For Child Health and Development · JPShimane University · JPWaseda University · JP

Funding

Japan Society for the Promotion of Science (JP) 19H03200Shimane University none
6 · The paper itself

Abstract

Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences accomplished with comparative genomic data among the cephalopods. The genome mapped by transcriptome data showed that (1) RNA editing contributed to transcriptome variation of lineage specific genes, such as W. scintillans luciferase, and (2) two types of luciferase enzymes were characterized with reasonable 3D models docked to a luciferin molecule. We report two different types of luciferase in one organism and possibly related to variety of colour types in the W. scintillans fluorescent organs.

Indexed as

AnimalsCephalopodaColorDecapodiformesFluorescenceGenomeLuciferasesLuminescent ProteinsMolecular Docking SimulationTranscriptomeLuciferasesLuminescent Proteins3D modellingCephalopodFirefly squidRepetitive elementsRNA editing

Identifiers

PMID33098466
PMCPMC7708342
OpenAlexW3094221479

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.