Evidence map›Paper›PMID 33097957›Full record

ArticleNephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association2021

Mutations in transcription factor CP2-like 1 may cause a novel syndrome with distal renal tubulopathy in humans.

Verena Klämbt, Max Werth, Ana C Onuchic-Whitford, Maike Getwan, Thomas M Kitzler, Florian Buerger, Youying Mao, Konstantin Deutsch, Nina Mann, Amar J Majmundar and 10 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Mutations inJournal of the American Society of Nephrology : JASN · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 4 countries.

Verena KlämbtDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Max WerthDivision of Nephrology, Columbia University, New York, NY, USA.
Ana C Onuchic-WhitfordDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Maike GetwanDepartment of Medicine, Renal Division, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Thomas M KitzlerDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Florian BuergerDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Youying MaoDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Konstantin DeutschDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Nina MannDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Amar J MajmundarDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Michael M KaminskiBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.
Tian ShenDivision of Nephrology, Columbia University, New York, NY, USA.
Kai M Schmidt-OttDepartment of Nephrology and Medical Intensive Care, Charité - Universitaetsmedizin Berlin, Germany.
Mohamed ShalabyPediatric Nephrology Center of Excellence and Pediatric Department, Faculty of Medicine, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia.
Sherif El DesokyPediatric Nephrology Center of Excellence and Pediatric Department, Faculty of Medicine, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia.
Jameela A KariPediatric Nephrology Center of Excellence and Pediatric Department, Faculty of Medicine, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia.
Shirlee ShrilDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Soeren S LienkampDepartment of Medicine, Renal Division, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Jonathan BaraschDivision of Nephrology, Columbia University, New York, NY, USA.
Friedhelm HildebrandtDivision of Nephrology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Boston Children's Hospital · USColumbia University · USKing Abdulaziz University · SAUniversity of Freiburg · DEBrigham and Women's Hospital · USCharité - Universitätsmedizin Berlin · DEMax Delbrück Center · DE

Funding

Transcriptional Regulation of Urothelial Differentiation During Homeostasis and Repair in Response to Urinary Tract InfectionU54DK104309 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JONATHAN M. BARASCH, ALI G GHARAVI · 2014 to 2026
$17.7M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
RESEARCH TRAINING IN PEDIATRIC NEPHROLOGYT32DK007726 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI BRISCOE, DAVID M. · 1994 to 2023
$5.9M
CYTOKINES CONVERT EPITHELIAL PRECURSORS TO NEPHRONSR01DK058872 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARASCH, JONATHAN M. · 2001 to 2010
$3.3M
IRON LIPOCALIN NGAL IN KIDNEY DISEASER01DK073462 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARASCH, JONATHAN M. · 2007 to 2015
$3.0M
Iron Delivery in the Developing KidneyR01DK092684 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARASCH, JONATHAN M. · 2012 to 2016
$1.7M
Mutations in TBC1D8B as a potential new cause of nephrotic syndromeF32DK122766 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI ONUCHIC-WHITFORD, ANA CLAUDIA · 2019 to 2020
$148k
CIHRNHGRI NIH HHS U54 HG006504NIDDK NIH HHS F32 DK122766NIDDK NIH HHS R01 DK058872NIDDK NIH HHS R01 DK068306NIDDK NIH HHS R01 DK073462NIDDK NIH HHS R01 DK092684NIDDK NIH HHS T32 DK007726NIDDK NIH HHS U54 DK104309
6 · The paper itself

Abstract

backgroundAn underlying monogenic cause of early-onset chronic kidney disease (CKD) can be detected in ∼20% of individuals. For many etiologies of CKD manifesting before 25 years of age, >200 monogenic causative genes have been identified to date, leading to the elucidation of mechanisms of renal pathogenesis.

methodsIn 51 families with echogenic kidneys and CKD, we performed whole-exome sequencing to identify novel monogenic causes of CKD.

resultsWe discovered a homozygous truncating mutation in the transcription factor gene transcription factor CP2-like 1 (TFCP2L1) in an Arabic patient of consanguineous descent. The patient developed CKD by the age of 2 months and had episodes of severe hypochloremic, hyponatremic and hypokalemic alkalosis, seizures, developmental delay and hypotonia together with cataracts. We found that TFCP2L1 was localized throughout kidney development particularly in the distal nephron. Interestingly, TFCP2L1 induced the growth and development of renal tubules from rat mesenchymal cells. Conversely, the deletion of TFCP2L1 in mice was previously shown to lead to reduced expression of renal cell markers including ion transporters and cell identity proteins expressed in different segments of the distal nephron. TFCP2L1 localized to the nucleus in HEK293T cells only upon coexpression with its paralog upstream-binding protein 1 (UBP1). A TFCP2L1 mutant complementary DNA (cDNA) clone that represented the patient's mutation failed to form homo- and heterodimers with UBP1, an essential step for its transcriptional activity.

conclusionHere, we identified a loss-of-function TFCP2L1 mutation as a potential novel cause of CKD in childhood accompanied by a salt-losing tubulopathy.

Indexed as

Epithelial-Mesenchymal TransitionMutationAnimalsChildDNA-Binding ProteinsExome SequencingFemaleHEK293 CellsHumansKidney DiseasesMiceMice, KnockoutRatsRepressor ProteinsSingle-Cell AnalysisTranscription FactorsDNA-Binding ProteinsRepressor ProteinsTFCP2L1 protein, humanTranscription FactorsUBP1 protein, humanchronic kidney diseasegeneticmetabolic alkalosismonogenicwhole-exome sequencing

Identifiers

PMID33097957
PMCPMC7834595
OpenAlexW3093668071

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.