Evidence map›Paper›PMID 33097808›Full record

ArticleScientific reports2020

Dynamin-2 R465W mutation induces long range perturbation in highly ordered oligomeric structures.

Fernando Hinostroza, Alan Neely, Ingrid Araya-Duran, Vanessa Marabolí, Jonathan Canan, Maximiliano Rojas, Daniel Aguayo, Ramón Latorre, Fernando D González-Nilo, Ana M Cárdenas

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Fernando HinostrozaCentro Interdisciplinario de Neurociencia de Valparaíso, Facultad de Ciencias, Universidad de Valparaíso, Gran Bretaña 1111, Valparaiso, Chile.
Alan NeelyCentro Interdisciplinario de Neurociencia de Valparaíso, Facultad de Ciencias, Universidad de Valparaíso, Gran Bretaña 1111, Valparaiso, Chile.
Ingrid Araya-DuranCenter for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Nacional Andrés Bello, Av. República 330, Santiago, Chile.
Vanessa MarabolíCenter for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Nacional Andrés Bello, Av. República 330, Santiago, Chile.
Jonathan CananCenter for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Nacional Andrés Bello, Av. República 330, Santiago, Chile.
Maximiliano RojasCenter for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Nacional Andrés Bello, Av. República 330, Santiago, Chile.
Daniel AguayoCenter for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Nacional Andrés Bello, Av. República 330, Santiago, Chile.
Ramón LatorreCentro Interdisciplinario de Neurociencia de Valparaíso, Facultad de Ciencias, Universidad de Valparaíso, Gran Bretaña 1111, Valparaiso, Chile.
Fernando D González-NiloCentro Interdisciplinario de Neurociencia de Valparaíso, Facultad de Ciencias, Universidad de Valparaíso, Gran Bretaña 1111, Valparaiso, Chile. fernando.gonzalez@unab.cl.ORCID 0000-0001-6857-3575
Ana M CárdenasCentro Interdisciplinario de Neurociencia de Valparaíso, Facultad de Ciencias, Universidad de Valparaíso, Gran Bretaña 1111, Valparaiso, Chile. ana.cardenas@uv.cl.ORCID 0000-0002-8747-4916
Universidad Andrés Bello · CLUniversity of Valparaíso · CLCatholic University of the Maule · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High order oligomers are crucial for normal cell physiology, and protein function perturbed by missense mutations underlies several autosomal dominant diseases. Dynamin-2 is one of such protein forming helical oligomers that catalyze membrane fission. Mutations in this protein, where R465W is the most frequent, cause dominant centronuclear myopathy, but the molecular mechanisms underpinning the functional modifications remain to be investigated. To unveil the structural impact of this mutation in dynamin-2, we used full-atom molecular dynamics simulations and coarse-grained models and built dimers and helices of wild-type (WT) monomers, mutant monomers, or both WT and mutant monomers combined. Our results show that the mutation R465W causes changes in the interactions with neighbor amino acids that propagate through the oligomer. These new interactions perturb the contact between monomers and favor an extended conformation of the bundle signaling element (BSE), a dynamin region that transmits the conformational changes from the GTPase domain to the rest of the protein. This extended configuration of the BSE that is only relevant in the helices illustrates how a small change in the microenvironment surrounding a single residue can propagate through the oligomer structures of dynamin explaining how dominance emerges in large protein complexes.

Indexed as

ArginineCrystallography, X-RayDynamin IIHumansMolecular Dynamics SimulationMutation, MissenseMyopathies, Structural, CongenitalProtein Conformation, alpha-HelicalProtein DomainsProtein MultimerizationTryptophanArginineDNM2 protein, humanDynamin IITryptophan

Identifiers

PMID33097808
PMCPMC7584598
OpenAlexW3093664742

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.