Evidence map›Paper›PMID 33097709›Full record

ArticleNPJ systems biology and applications2020

Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media.

Erika Gaspari, Antoni Malachowski, Luis Garcia-Morales, Raul Burgos, Luis Serrano, Vitor A P Martins Dos Santos, Maria Suarez-Diez

Open access · goldAbstract read
In one paragraph

Article in NPJ systems biology and applications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Living Microbial Drugs.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Journal of medical microbiology · 2024
    Review
  10. Article
  11. MinisculeSustainable microbiology · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Erika GaspariLaboratory of Systems and Synthetic Biology, Wageningen University and Research, Wageningen, the Netherlands. erika.gaspariwur@gmail.com.ORCID 0000-0003-3354-9721
Antoni MalachowskiLaboratory of Systems and Synthetic Biology, Wageningen University and Research, Wageningen, the Netherlands.
Luis Garcia-MoralesINRA, UMR 1332 de Biologie du Fruit et Pathologie, F-33140, Villenave d'Ornon, France.
Raul BurgosCentre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Doctor Aiguader 88, Barcelona, 08003, Spain.
Luis SerranoCentre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Doctor Aiguader 88, Barcelona, 08003, Spain.ORCID 0000-0002-5276-1392
Vitor A P Martins Dos SantosLaboratory of Systems and Synthetic Biology, Wageningen University and Research, Wageningen, the Netherlands.ORCID 0000-0002-2352-9017
Maria Suarez-DiezLaboratory of Systems and Synthetic Biology, Wageningen University and Research, Wageningen, the Netherlands. maria.suarezdiez@wur.nl.ORCID 0000-0001-5845-146X
Wageningen University & Research · NLBarcelona Institute of Science and Technology · ESBiologie du Fruit et Pathologie · FRInstitució Catalana de Recerca i Estudis Avançats · ESLifeGlimmer (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycoplasma pneumoniae is a slow-growing, human pathogen that causes atypical pneumonia. Because it lacks a cell wall, many antibiotics are ineffective. Due to its reduced genome and dearth of many biosynthetic pathways, this fastidious bacterium depends on rich, undefined medium for growth, which makes large-scale cultivation challenging and expensive. To understand factors limiting growth, we developed a genome-scale, constraint-based model of M. pneumoniae called iEG158_mpn to describe the metabolic potential of this bacterium. We have put special emphasis on cell membrane formation to identify key lipid components to maximize bacterial growth. We have used this knowledge to predict essential components validated with in vitro serum-free media able to sustain growth. Our findings also show that glycolysis and lipid metabolism are much less efficient under hypoxia; these findings suggest that factors other than metabolism and membrane formation alone affect the growth of M. pneumoniae. Altogether, our modelling approach allowed us to optimize medium composition, enabled growth in defined media and streamlined operational requirements, thereby providing the basis for stable, reproducible and less expensive production.

Indexed as

Culture Media, Serum-FreeModels, BiologicalEnergy MetabolismGlycolysisMycoplasma pneumoniaeCulture Media, Serum-Free

Identifiers

PMID33097709
PMCPMC7584665
OpenAlexW3093643162

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.