Evidence map›Paper›PMID 33096014›Full record

ArticleStructure (London, England : 1993)2021

Structural Basis for Toxin Inhibition in the VapXD Toxin-Antitoxin System.

Marie B Bertelsen, Meriem Senissar, Maja H Nielsen, Francesco Bisiak, Marta V Cunha, Ashley L Molinaro, Dayle A Daines, Ditlev E Brodersen

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Plasmids inClinical microbiology reviews · 2026
    Review
  2. Expression of the VapD protein byMicrobiology (Reading, England) · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Prokaryote toxin-antitoxin modules: Complex regulation of an unclear function.Protein science : a publication of the Protein Society · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Marie B BertelsenDepartment of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus C, Denmark.
Meriem SenissarDepartment of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus C, Denmark.
Maja H NielsenDepartment of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus C, Denmark.
Francesco BisiakDepartment of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus C, Denmark.
Marta V CunhaDepartment of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus C, Denmark.
Ashley L MolinaroDepartment of Biological Sciences, Old Dominion University, Norfolk, VA 23529, USA.
Dayle A DainesDepartment of Biological Sciences, Old Dominion University, Norfolk, VA 23529, USA.
Ditlev E BrodersenDepartment of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus C, Denmark. Electronic address: deb@mbg.au.dk.
Aarhus University · DKOld Dominion University · US

Funding

High Throughput Screening to Discover Novel Toxin Inhibitors Relevant to the Treatment of Otitis MediaU01DC014756 · NIDCD · OLD DOMINION UNIVERSITY · PI DAINES, DAYLE ANITA · 2015 to 2017
$1.0M
NIDCD NIH HHS U01 DC014756
6 · The paper itself

Abstract

Bacterial type II toxin-antitoxin (TA) modules encode a toxic protein that downregulates metabolism and a specific antitoxin that binds and inhibits the toxin during normal growth. In non-typeable Haemophilus influenzae, a common cause of infections in humans, the vapXD locus was found to constitute a functional TA module and contribute to pathogenicity; however, the mode of action of VapD and the mechanism of inhibition by the VapX antitoxin remain unknown. Here, we report the structure of the intact H. influenzae VapXD complex, revealing an unusual 2:1 TA molecular stoichiometry where a Cas2-like homodimer of VapD binds a single VapX antitoxin. VapX consists of an oligonucleotide/oligosaccharide-binding domain that docks into an asymmetrical cavity on the toxin dimer. Structures of isolated VapD further reveal how a symmetrical toxin homodimer adapts to interacting with an asymmetrical antitoxin and suggest how a primordial TA system evolved to become part of CRISPR-Cas immunity systems.

Indexed as

Toxin-Antitoxin SystemsBacterial ProteinsBacterial ToxinsBinding SitesHaemophilus influenzaeMembrane GlycoproteinsMolecular Docking SimulationProtein DomainsBacterial ProteinsBacterial ToxinsMembrane GlycoproteinsVapD protein, BacteriaCas2CRISPR-CasHaemophilus influenzaeOB foldRNaseVapD

Identifiers

PMID33096014
PMCPMC7867571
OpenAlexW3094114287

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.