Evidence map›Paper›PMID 33095315›Full record

ArticleHuman genetics2021

A CRISPR and high-content imaging assay compliant with ACMG/AMP guidelines for clinical variant interpretation in ciliopathies.

Liliya Nazlamova, N Simon Thomas, Man-Kim Cheung, Jelmer Legebeke, Jenny Lord, Reuben J Pengelly, William J Tapper, Gabrielle Wheway

Open access · hybridAbstract read
In one paragraph

Article in Human genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Novel compound heterozygous variants in theFrontiers in pediatrics · 2024
    Article
  2. Article
  3. Article
  4. Primary cilia in retinal pigment epithelium development and diseases.Journal of cellular and molecular medicine · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Liliya NazlamovaFaculty of Medicine, Human Development and Health, University of Southampton, Southampton, UK.
N Simon ThomasFaculty of Medicine, Human Development and Health, University of Southampton, Southampton, UK.
Man-Kim CheungCentre for Research in Biosciences, University of the West of England, Bristol, Bristol, UK.
Jelmer LegebekeFaculty of Medicine, Human Development and Health, University of Southampton, Southampton, UK.
Jenny LordFaculty of Medicine, Human Development and Health, University of Southampton, Southampton, UK.
Reuben J PengellyFaculty of Medicine, Human Development and Health, University of Southampton, Southampton, UK.
William J TapperFaculty of Medicine, Human Development and Health, University of Southampton, Southampton, UK.
Gabrielle WhewayFaculty of Medicine, Human Development and Health, University of Southampton, Southampton, UK. G.Wheway@soton.ac.uk.ORCID http://orcid.org/0000-0002-0494-0783
University Hospital Southampton NHS Foundation Trust · GBUniversity of Southampton · GBSalisbury District Hospital · GBUniversity of the West of England · GB

Funding

National Eye Research Centre SAC019Wellcome TrustWellcome Trust 204378/Z/16/Z
6 · The paper itself

Abstract

Ciliopathies are a broad range of inherited developmental and degenerative diseases associated with structural or functional defects in motile or primary non-motile cilia. There are around 200 known ciliopathy disease genes and whilst genetic testing can provide an accurate diagnosis, 24-60% of ciliopathy patients who undergo genetic testing do not receive a genetic diagnosis. This is partly because following current guidelines from the American College of Medical Genetics and the Association for Molecular Pathology, it is difficult to provide a confident clinical diagnosis of disease caused by missense or non-coding variants, which account for more than one-third of cases of disease. Mutations in PRPF31 are the second most common cause of the degenerative retinal ciliopathy autosomal dominant retinitis pigmentosa. Here, we present a high-throughput high-content imaging assay providing quantitative measure of effect of missense variants in PRPF31 which meets the recently published criteria for a baseline standard in vitro test for clinical variant interpretation. This assay utilizes a new PRPF31

Indexed as

CRISPR-Cas SystemsCell LineCells, CulturedCiliopathiesDiagnostic ImagingEye ProteinsGene EditingGene Knockout TechniquesGuidelines as TopicImage Processing, Computer-AssistedMutation, MissenseRetinaRetinal DegenerationRetinitis PigmentosaEye ProteinsPRPF31 protein, human

Identifiers

PMID33095315
PMCPMC7981318
OpenAlexW3094297255

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.