Evidence map›Paper›PMID 33095259›Full record

ArticleThe Journal of experimental medicine2021

Lysosomal cathepsin creates chimeric epitopes for diabetogenic CD4 T cells via transpeptidation.

Brendan Reed, Frances Crawford, Ryan C Hill, Niyun Jin, Janice White, S Harsha Krovi, Philippa Marrack, Kirk Hansen, John W Kappler

Open access · hybridAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Crinophagy in Pancreatic Beta Cells: From Insulin Granule Turnover to Diabetes Pathogenesis.Pathophysiology : the official journal of the International Society for Pathophysiology · 2026
    Review
  5. Article
  6. Article
  7. The role of chromogranin A cleavage products in onset of type 1 and 2 diabetes.Frontiers in clinical diabetes and healthcare · 2026
    Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. CD4Immunity · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Brendan ReedDepartment of Biomedical Research, National Jewish Health, Denver, CO.
Frances CrawfordDepartment of Biomedical Research, National Jewish Health, Denver, CO.
Ryan C HillBiochemistry and Molecular Genetics, Anschutz Medical Campus, University of Colorado, Aurora, CO.
Niyun JinDepartment of Biomedical Research, National Jewish Health, Denver, CO.
Janice WhiteDepartment of Biomedical Research, National Jewish Health, Denver, CO.
S Harsha KroviDepartment of Biomedical Research, National Jewish Health, Denver, CO.
Philippa MarrackDepartment of Biomedical Research, National Jewish Health, Denver, CO.
Kirk HansenBiochemistry and Molecular Genetics, Anschutz Medical Campus, University of Colorado, Aurora, CO.
John W KapplerDepartment of Biomedical Research, National Jewish Health, Denver, CO.
National Jewish Health · USUniversity of Colorado Anschutz Medical Campus · US

Funding

Project 3: Epitope Selection in Type 1 DiabetesP01AI118688 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 2016 to 2020
$8.4M
CHARACTERISTICS OF T CELL RECEPTORSR01AI018785 · NIAID · NATIONAL JEWISH HEALTH · PI MARRACK, PHILIPPA C. · 1985 to 2022
$7.3M
Molecular Mechanisms of Immune ToleranceT32AI074491 · NIAID · NATIONAL JEWISH HEALTH · PI CAMBIER, JOHN C, PELANDA, ROBERTA · 2009 to 2023
$4.1M
NIAID NIH HHS P01 AI118688NIAID NIH HHS R01 AI018785NIAID NIH HHS T32 AI074491
6 · The paper itself

Abstract

The identification of the peptide epitopes presented by major histocompatibility complex class II (MHCII) molecules that drive the CD4 T cell component of autoimmune diseases has presented a formidable challenge over several decades. In type 1 diabetes (T1D), recent insight into this problem has come from the realization that several of the important epitopes are not directly processed from a protein source, but rather pieced together by fusion of different peptide fragments of secretory granule proteins to create new chimeric epitopes. We have proposed that this fusion is performed by a reverse proteolysis reaction called transpeptidation, occurring during the catabolic turnover of pancreatic proteins when secretory granules fuse with lysosomes (crinophagy). Here, we demonstrate several highly antigenic chimeric epitopes for diabetogenic CD4 T cells that are produced by digestion of the appropriate inactive fragments of the granule proteins with the lysosomal protease cathepsin L (Cat-L). This pathway has implications for how self-tolerance can be broken peripherally in T1D and other autoimmune diseases.

Indexed as

AnimalsAutoimmune DiseasesCathepsinsCD4-Positive T-LymphocytesCell LineDiabetes Mellitus, Type 1Epitopes, T-LymphocyteHistocompatibility Antigens Class IIImmune ToleranceLysosomesPancreasPeptide FragmentsCathepsinsEpitopes, T-LymphocyteHistocompatibility Antigens Class IIPeptide Fragments

Identifiers

PMID33095259
PMCPMC7590512
OpenAlexW3093844285

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.