Evidence map›Paper›PMID 33094397›Full record

ArticleJournal of plant research2020

The SoNAP gene from sugarcane (Saccharum officinarum) encodes a senescence-associated NAC transcription factor involved in response to osmotic and salt stress.

Evelyn A Carrillo-Bermejo, Samuel David Gamboa-Tuz, Alejandro Pereira-Santana, Miguel A Keb-Llanes, Enrique Castaño, Luis Joel Figueroa-Yañez, Luis C Rodriguez-Zapata

Abstract read
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In one paragraph

Article in Journal of plant research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Evelyn A Carrillo-BermejoBiotechnology Unit, Centro de Investigacion Cientifica de Yucatan, 97205, Mérida, Yucatan, Mexico.ORCID http://orcid.org/0000-0001-6854-7238
Samuel David Gamboa-TuzBiotechnology Unit, Centro de Investigacion Cientifica de Yucatan, 97205, Mérida, Yucatan, Mexico.ORCID http://orcid.org/0000-0002-6863-7943
Alejandro Pereira-SantanaIndustrial Biotechnology Unit, Centro de Investigacion y Asistencia en Tecnologia y Diseño del Estado de Jalisco, Zapopan, Jalisco, Mexico.ORCID http://orcid.org/0000-0001-7714-9485
Miguel A Keb-LlanesBiotechnology Unit, Centro de Investigacion Cientifica de Yucatan, 97205, Mérida, Yucatan, Mexico.
Enrique CastañoPlant Biochemistry and Molecular Biology Unit, Centro de Investigacion Cientifica de Yucatan, 97205, Mérida, Yucatán, Mexico.
Luis Joel Figueroa-YañezIndustrial Biotechnology Unit, Centro de Investigacion y Asistencia en Tecnologia y Diseño del Estado de Jalisco, Zapopan, Jalisco, Mexico. lfigueroa@ciatej.mx.
Luis C Rodriguez-ZapataBiotechnology Unit, Centro de Investigacion Cientifica de Yucatan, 97205, Mérida, Yucatan, Mexico. lcrz@cicy.mx.ORCID http://orcid.org/0000-0002-4872-8231
Secretaría de Investigación, Innovación y Educación Superior · MXCentro de Investigación y Proyectos en Ambiente y Desarrollo · MXConsejo Nacional de Ciencia y Tecnología · GT

Funding

Consejo Nacional de Ciencia y Tecnología 215098Consejo Nacional de Ciencia y Tecnología 438058Consejo Nacional de Ciencia y Tecnología 462859
6 · The paper itself

Abstract

Climate change has caused serious problems related to the productivity of agricultural crops directly affecting human well-being. Plants have evolved to produce molecular mechanisms in response to environmental stresses, such as transcription factors (TFs), to cope with abiotic stress. The NAC proteins constitute a plant-specific family of TFs involved in plant development processes and tolerance to biotic and abiotic stress. Sugarcane is a perennial grass that accumulates a large amount of sucrose and is a crucial agro-industry crop in tropical regions. Our previous transcriptome analyses on sugarcane that were exposed to drought conditions revealed significant increases in the expression of several NAC TFs through all of the time-point stress conditions. In this work, we characterize all previously detected sugarcane NAC genes, utilizing phylogenetics and expression analyses. Furthermore, we characterized a sugarcane NAC gene orthologous to the senescence-associated genes AtNAP and OsNAP via transient expression in tobacco calluses, from Arabidopsis and rice respectively, thus we named it the SoNAP gene. Transient localization assays on onion epidermal cells confirmed the nuclear localization of the SoNAP. Expression analysis showed that the SoNAP gene was induced by high salinity, drought, and abscisic acid treatments. The overexpression of the SoNAP gene in tobacco calluses caused a senescence associated phenotype. Overall, our results indicated that the SoNAP gene from sugarcane is transcriptionally induced under abiotic stress conditions and conserved the predicted senescence-associated functions when it was overexpressed in a heterologous plant model. This work provides key insights about the senescence mechanisms related to abiotic stress and it provides a benchmark for future work on the improvement of this economically important crop.

Indexed as

Osmotic PressureSaccharumSalt StressDroughtsGene Expression Regulation, PlantPlant ProteinsPlants, Genetically ModifiedTranscription FactorsPlant ProteinsTranscription FactorsAbiotic stressDroughtNACPhylogenetic analysisSalinitySugarcane

Identifiers

PMID33094397
OpenAlexW3093928703

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.