Evidence map›Paper›PMID 33094287›Full record

ArticleNAR cancer2020

Activation-induced cytidine deaminase localizes to G-quadruplex motifs at mutation hotspots in lymphoma.

Ying-Zhi Xu, Piroon Jenjaroenpun, Thidathip Wongsurawat, Stephanie D Byrum, Volodymyr Shponka, David Tannahill, Elizabeth A Chavez, Stacy S Hung, Christian Steidl, Shankar Balasubramanian and 2 more

Open access · goldAbstract read
In one paragraph

Article in NAR cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  7. Article
  8. Review
  9. Mutations atMolecular and cellular biology · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. G-Quadruplex Recognition by DARPIns through Epitope/Paratope Analogy.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Ying-Zhi XuDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.
Piroon JenjaroenpunDepartment of Bioinformatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.ORCID 0000-0002-1555-401X
Thidathip WongsurawatDepartment of Bioinformatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.ORCID 0000-0002-3659-2074
Stephanie D ByrumDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.
Volodymyr ShponkaDepartment of Pathology, University of Arizona, Tucson, AZ 85721, USA.
David TannahillCancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, UK.
Elizabeth A ChavezBritish Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada.
Stacy S HungBritish Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada.
Christian SteidlBritish Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada.
Shankar BalasubramanianCancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, UK.
Lisa M RimszaLaboratory Medicine and Pathology, Mayo Clinic, Scottsdale, AZ 85259, USA.
Samantha KendrickDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.ORCID 0000-0002-0281-5815
BC Cancer Agency · CAUniversity of Arkansas for Medical Sciences · USSiriraj Hospital · THUniversity of Cambridge · GBMayo Clinic in Arizona · USUniversity of Arizona · US

Funding

Translational Regulation in Normal Erythropoiesis and Diamond Blackfan AnemiaP20GM121293 · NIGMS · ARKANSAS CHILDREN'S HOSPITAL RES INST · PI Samrat Roy Choudhury · 2017 to 2026
$27.6M
Cancer Research UK 18618Cancer Research UK 19836NIGMS NIH HHS P20 GM121293
6 · The paper itself

Abstract

Diffuse large B-cell lymphoma (DLBCL) is a molecularly heterogeneous group of malignancies with frequent genetic abnormalities. G-quadruplex (G4) DNA structures may facilitate this genomic instability through association with activation-induced cytidine deaminase (AID), an antibody diversification enzyme implicated in mutation of oncogenes in B-cell lymphomas. Chromatin immunoprecipitation sequencing analyses in this study revealed that AID hotspots in both activated B cells and lymphoma cells

Identifiers

PMID33094287
PMCPMC7556405
OpenAlexW3094558991

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.