Evidence map›Paper›PMID 33093519›Full record

ArticleScientific reports2020

Identifying genetic factors that contribute to the increased risk of congenital heart defects in infants with Down syndrome.

Cristina E Trevino, Aaron M Holleman, Holly Corbitt, Cheryl L Maslen, Tracie C Rosser, David J Cutler, H Richard Johnston, Benjamin L Rambo-Martin, Jai Oberoi, Kenneth J Dooley and 16 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Alzheimer's polygenic risk scores are associated with cognitive phenotypes in Down syndrome.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Article
  6. Human Genetics of Atrioventricular Septal Defect.Advances in experimental medicine and biology · 2024
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genotype-phenotype correlates in Joubert syndrome: A review.American journal of medical genetics. Part C, Seminars in medical genetics · 2022
    Review
  14. Review
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 15 institutions in 2 countries.

Cristina E Trevino *Department of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
Aaron M Holleman *Department of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, GA, USA.
Holly CorbittDivision of Cardiovascular Medicine and the Heart Research Center, Oregon Health and Science University, Portland, OR, USA.
Cheryl L MaslenDivision of Cardiovascular Medicine and the Heart Research Center, Oregon Health and Science University, Portland, OR, USA.
Tracie C RosserDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
David J CutlerDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
H Richard JohnstonDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
Benjamin L Rambo-MartinDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
Jai OberoiDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
Kenneth J DooleySibley Heart Center Cardiology, Department of Pediatrics, Children's Healthcare of Atlanta, Emory University, Atlanta, GA, USA.
George T CaponeKennedy Krieger Institute, Baltimore, MD, USA.
Roger H ReevesDepartment of Physiology and the Institute for Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Heather J CordellPopulation Health Sciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
Bernard D KeavneyDivision of Cardiovascular Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.
A J AgopianHuman Genetics Center; Department of Epidemiology, Human Genetics, and Environmental Sciences, UTHealth School of Public Health, Houston, TX, USA.
Elizabeth GoldmuntzDivision of Cardiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Peter J GruberDepartment of Surgery, Yale School of Medicine, New Haven, CT, USA.
James E O'BrienThe Ward Family Heart Center, Section of Cardiac Surgery, Children's Mercy Hospital, Kansas City, MO, USA.
Douglas C BittelCollege of Biosciences, Kansas City University of Medicine and Biosciences, Kansas City, MO, USA.
Lalita WadhwaTexas Children's Hospital, Houston, TX, USA.
Clifford L CuaHeart Center, Nationwide Children's Hospital, Columbus, OH, USA.
Ivan P MoskowitzDepartments of Pediatrics, Pathology, and Human Genetics, The University of Chicago, Chicago, IL, USA.
Jennifer G MulleDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
Michael P EpsteinDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
Stephanie L ShermanDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA.
Michael E ZwickDepartment of Human Genetics, Emory University School of Medicine, 300 Whitehead Biomedical Research Building, 615 Michael St., Atlanta, GA, 30322, USA. mzwick@emory.edu.
Emory University · USOregon Health & Science University · USChildren's Healthcare of Atlanta · USChildren's Hospital of Philadelphia · USChildren's Mercy Hospital · USJohns Hopkins University · USKansas City University · USKennedy Krieger Institute · USNationwide Children's Hospital · USNewcastle University · GBTexas Children's Hospital · USThe University of Texas Health Science Center at Houston · USUniversity of Chicago · USUniversity of Manchester · GBYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Implementing a Maternal health and PRegnancy Outcomes Vision for Everyone (IMPROVE)UL1TR002378 · NCATS · EMORY UNIVERSITY · PI Andres J Garcia, Elizabeth O. Ofili · 2017 to 2026
$92.1M
Oregon Clinical and Translational Research Institute - The National COVID Cohort Collaborative (N3C)UL1TR002369 · NCATS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Cynthia D Morris, Christopher G. Slatore · 2017 to 2026
$78.4M
INSTITUTIONAL CLINICAL AND TRANSLATIONAL SCIENCE AWARDUL1RR024134 · NCRR · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2006 to 2011
$70.4M
NHLBI Pediatric Translational Consortium Administrative Coordinating CenterU01HL098188 · NHLBI · NEW ENGLAND RESEARCH INSTITUTES, INC. · PI HAMZA, TAYE, MILLER, JULIE ELAINE · 2009 to 2015
$41.3M
Institutional Clinical and Translational Science AwardUL1TR000003 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2012 to 2015
$38.9M
Molecular Analysis of Human Subtelomeric RearrangementsP50HL074731 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI LEVY, ROBERT J · 2004 to 2008
$19.2M
ZIDOVUDINE VS 2',3'DIDEHYDRO-3'DEOXYTHYMIDINE IN CHILDRENM01RR000240 · NCRR · CHILDREN'S HOSP OF PHILADELPHIA · PI ALTSCHULER, STEVEN M · 1985 to 2006
$15.3M
TRISOMY 21: RISK FACTORS FOR CHROMOSOME NONDISJUNCTIONR01HD038979 · NICHD · EMORY UNIVERSITY · PI FEINGOLD, ELEANOR, SHERMAN, STEPHANIE L. · 2000 to 2013
$11.2M
Genomic Effects on Right Ventricular Function, Clinical Features and Outcomes in CHDU01HL098147 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI NEWBURGER, JANE W., ROBERTS, AMY E · 2009 to 2024
$6.7M
Genetic determinants of human heterotaxy and aortic arch malformationU01HL098162 · NHLBI · YALE UNIVERSITY · PI BRUECKNER, MARTINA, GRUBER, PETER J · 2009 to 2024
$5.9M
Genetic basis for congenital heart defectsR01HL083300 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI REEVES, ROGER H · 2007 to 2011
$5.6M
American Heart Association-American Stroke Association 16PRE30190012British Heart Foundation CH/13/2/30154British Heart Foundation RG/15/12/31616NCATS NIH HHS UL1 TR000003NCATS NIH HHS UL1TR000003NCATS NIH HHS UL1 TR001863NCATS NIH HHS UL1 TR002369NCATS NIH HHS UL1 TR002378NCATS NIH HHS UL1TR002378NCRR NIH HHS M01 RR000240NCRR NIH HHS M01-RR-000240, RR024134NCRR NIH HHS UL1 RR024134NHLBI NIH HHS HHSN268201100037CNHLBI NIH HHS P50 HL074731NHLBI NIH HHS P50-HL74731NHLBI NIH HHS R01 HL083300NHLBI NIH HHS R01 HL092153NHLBI NIH HHS R01 HL092981NHLBI NIH HHS R01 HL092981-01A1NHLBI NIH HHS R01 HL124836NHLBI NIH HHS R01 HL126509NHLBI NIH HHS U01 HL098123NHLBI NIH HHS U01 HL098147NHLBI NIH HHS U01 HL098153NHLBI NIH HHS U01 HL098162NHLBI NIH HHS U01 HL098163NHLBI NIH HHS U01 HL098188NICHD NIH HHS R01 HD038979NICHD NIH HHS R01 HD38979NIGMS NIH HHS GM117946NIGMS NIH HHS R01 GM117946Wellcome Trust
6 · The paper itself

Abstract

Atrioventricular septal defects (AVSD) are a severe congenital heart defect present in individuals with Down syndrome (DS) at a > 2000-fold increased prevalence compared to the general population. This study aimed to identify risk-associated genes and pathways and to examine a potential polygenic contribution to AVSD in DS. We analyzed a total cohort of 702 individuals with DS with or without AVSD, with genomic data from whole exome sequencing, whole genome sequencing, and/or array-based imputation. We utilized sequence kernel association testing and polygenic risk score (PRS) methods to examine rare and common variants. Our findings suggest that the Notch pathway, particularly NOTCH4, as well as genes involved in the ciliome including CEP290 may play a role in AVSD in DS. These pathways have also been implicated in DS-associated AVSD in prior studies. A polygenic component for AVSD in DS has not been examined previously. Using weights based on the largest genome-wide association study of congenital heart defects available (2594 cases and 5159 controls; all general population samples), we found PRS to be associated with AVSD with odds ratios ranging from 1.2 to 1.3 per standard deviation increase in PRS and corresponding liability r

Indexed as

Antigens, NeoplasmCell Cycle ProteinsCytoskeletal ProteinsGenome-Wide Association StudyReceptor, Notch4Cohort StudiesDown SyndromeFemaleHeart Septal DefectsHumansInfantInfant, NewbornMaleRiskWhole Genome SequencingAntigens, NeoplasmCell Cycle ProteinsCep290 protein, humanCytoskeletal ProteinsNOTCH4 protein, humanReceptor, Notch4

Identifiers

PMID33093519
PMCPMC7582922
OpenAlexW3093491771

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.