Evidence map›Paper›PMID 33093202›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Engineered ACE2 receptor traps potently neutralize SARS-CoV-2.

Anum Glasgow, Jeff Glasgow, Daniel Limonta, Paige Solomon, Irene Lui, Yang Zhang, Matthew A Nix, Nicholas J Rettko, Shoshana Zha, Rachel Yamin and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 182 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
182citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

182 citing papers in PubMed, 1 synthesis or guideline pooled it, 261 citations in OpenAlex.

  1. SARS-CoV-2-neutralising monoclonal antibodies to prevent COVID-19.The Cochrane database of systematic reviews · 2022
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122 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 2 countries.

Anum GlasgowDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94158.ORCID 0000-0002-0938-881X
Jeff GlasgowDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0001-6699-8983
Daniel LimontaLi Ka Shing Institute of Virology, University of Alberta, Edmonton, AB T6G 2E1, Canada.ORCID 0000-0002-5128-6542
Paige SolomonDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.
Irene LuiDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0002-6171-5443
Yang ZhangDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94158.ORCID 0000-0002-7497-3206
Matthew A NixDepartment of Laboratory Medicine, University of California, San Francisco, CA 94143.ORCID 0000-0001-7741-5368
Nicholas J RettkoDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0002-4332-2697
Shoshana ZhaDepartment of Medicine, University of California, San Francisco, CA 94143.ORCID 0000-0002-4190-2823
Rachel YaminLaboratory of Molecular Genetics and Immunology, Rockefeller University, New York, NY 10065.
Kevin KaoLaboratory of Molecular Genetics and Immunology, Rockefeller University, New York, NY 10065.
Oren S RosenbergDepartment of Medicine, University of California, San Francisco, CA 94143.ORCID 0000-0002-5736-4388
Jeffrey V RavetchLaboratory of Molecular Genetics and Immunology, Rockefeller University, New York, NY 10065.ORCID 0000-0003-2024-9041
Arun P WiitaDepartment of Laboratory Medicine, University of California, San Francisco, CA 94143.ORCID 0000-0002-7465-6964
Kevin K LeungDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0002-2087-4974
Shion A LimDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0003-2136-2732
Xin X ZhouDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0002-8198-2856
Tom C HobmanLi Ka Shing Institute of Virology, University of Alberta, Edmonton, AB T6G 2E1, Canada.ORCID 0000-0002-5744-3545
Tanja KortemmeDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94158.
James A WellsDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158; jim.wells@ucsf.edu.ORCID 0000-0001-8267-5519
University of California, San Francisco · USRockefeller University · USUniversity of Alberta · CA

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kate Taylor Shumate · 1999 to 2026
$209.7M
Understanding B cell memory in response to diverse virus infectionsU19AI111825 · NIAID · ROCKEFELLER UNIVERSITY · PI RAVETCH, JEFFREY VICTOR · 2014 to 2023
$26.0M
UCSF IRACDA Scholars ProgramK12GM081266 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Raymond M. Esquerra, HOLLY A. INGRAHAM · 2007 to 2026
$19.4M
Surfaceomic technologies and antibodies to probe cell surface proteomes and their interactomes at unprecedented small scale and high-resolutionR35GM122451 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JAMES A WELLS · 2017 to 2026
$5.3M
Mapping and rewiring protein allosteryR00GM135529 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GLASGOW, ANUM AZAM · 2022 to 2024
$747k
Mapping and rewiring protein allosteryK99GM135529 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GLASGOW, ANUM AZAM · 2020 to 2021
$194k
NCI NIH HHS P30 CA082103NIAID NIH HHS U19 AI111825NIGMS NIH HHS K12 GM081266NIGMS NIH HHS K99 GM135529NIGMS NIH HHS R00 GM135529NIGMS NIH HHS R35 GM122451NIH HHS DP2 OD022552NIH HHS R35 GM122451-01
6 · The paper itself

Abstract

An essential mechanism for severe acute respiratory syndrome coronavirus 1 (SARS-CoV-1) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection begins with the viral spike protein binding to the human receptor protein angiotensin-converting enzyme II (ACE2). Here, we describe a stepwise engineering approach to generate a set of affinity optimized, enzymatically inactivated ACE2 variants that potently block SARS-CoV-2 infection of cells. These optimized receptor traps tightly bind the receptor binding domain (RBD) of the viral spike protein and prevent entry into host cells. We first computationally designed the ACE2-RBD interface using a two-stage flexible protein backbone design process that improved affinity for the RBD by up to 12-fold. These designed receptor variants were affinity matured an additional 14-fold by random mutagenesis and selection using yeast surface display. The highest-affinity variant contained seven amino acid changes and bound to the RBD 170-fold more tightly than wild-type ACE2. With the addition of the natural ACE2 collectrin domain and fusion to a human immunoglobulin crystallizable fragment (Fc) domain for increased stabilization and avidity, the most optimal ACE2 receptor traps neutralized SARS-CoV-2-pseudotyped lentivirus and authentic SARS-CoV-2 virus with half-maximal inhibitory concentrations (IC50s) in the 10- to 100-ng/mL range. Engineered ACE2 receptor traps offer a promising route to fighting infections by SARS-CoV-2 and other ACE2-using coronaviruses, with the key advantage that viral resistance would also likely impair viral entry. Moreover, such traps can be predesigned for viruses with known entry receptors for faster therapeutic response without the need for neutralizing antibodies isolated from convalescent patients.

Indexed as

Drug DesignAngiotensin-Converting Enzyme 2Antiviral AgentsBinding SitesHEK293 CellsHumansMolecular Docking SimulationMutationPeptide LibraryProtein BindingProtein EngineeringRecombinant ProteinsSaccharomyces cerevisiaeSpike Glycoprotein, CoronavirusACE2 protein, humanAngiotensin-Converting Enzyme 2Antiviral AgentsPeptide LibraryRecombinant ProteinsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2antiviral therapeuticscomputational designreceptor trapSARS-CoV-2yeast display

Identifiers

PMID33093202
PMCPMC7668070
OpenAlexW3093802804

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.