Evidence map›Paper›PMID 33092536›Full record

ArticleBMC plant biology2020

Variation in the expression of a transmembrane protein influences cell growth in Arabidopsis thaliana petals by altering auxin responses.

Charlotte N Miller, Jack Dumenil, Fu Hao Lu, Caroline Smith, Neil McKenzie, Volodymyr Chapman, Joshua Ball, Mathew Box, Michael Bevan

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Charlotte N MillerCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Jack DumenilCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Fu Hao LuCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Caroline SmithCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Neil McKenzieCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Volodymyr ChapmanCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Joshua BallCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Mathew BoxCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Michael BevanCell and Developmental Biology Department John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK. michael.bevan@jic.ac.uk.ORCID http://orcid.org/0000-0001-8264-2354
John Innes Centre · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe same species of plant can exhibit very diverse sizes and shapes of organs that are genetically determined. Characterising genetic variation underlying this morphological diversity is an important objective in evolutionary studies and it also helps identify the functions of genes influencing plant growth and development. Extensive screens of mutagenised Arabidopsis populations have identified multiple genes and mechanisms affecting organ size and shape, but relatively few studies have exploited the rich diversity of natural populations to identify genes involved in growth control.

resultsWe screened a relatively well characterised collection of Arabidopsis thaliana accessions for variation in petal size. Association analyses identified sequence and gene expression variation on chromosome 4 that made a substantial contribution to differences in petal area. Variation in the expression of a previously uncharacterised gene At4g16850 (named as KSK) had a substantial role on variation in organ size by influencing cell size. Over-expression of KSK led to larger petals with larger cells and promoted the formation of stamenoid features. The expression of auxin-responsive genes known to limit cell growth was reduced in response to KSK over-expression. ANT expression was also reduced in KSK over-expression lines, consistent with altered floral identities. Auxin responses were reduced in KSK over-expressing cells, consistent with changes in auxin-responsive gene expression. KSK may therefore influence auxin responses during petal development.

conclusionsUnderstanding how genetic variation influences plant growth is important for both evolutionary and mechanistic studies. We used natural populations of Arabidopsis thaliana to identify sequence variation in a promoter region of Arabidopsis accessions that mediated differences in the expression of a previously uncharacterised membrane protein. This variation contributed to altered auxin responses and cell size during petal growth.

Indexed as

ArabidopsisArabidopsis ProteinsFlowersGene Expression Regulation, PlantGenes, PlantIndoleacetic AcidsMembrane ProteinsPlant Growth RegulatorsArabidopsis ProteinsAT4G16850 protein, ArabidopsisIndoleacetic AcidsMembrane ProteinsPlant Growth RegulatorsArabidopsis thaliana/organ size variation/natural genetic variation/auxin responses

Identifiers

PMID33092536
PMCPMC7584087
OpenAlexW3094609532

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.