Evidence map›Paper›PMID 33091122›Full record

ArticleNucleic acids research2020

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.

Donna Matzov, Masato Taoka, Yuko Nobe, Yoshio Yamauchi, Yehuda Halfon, Nofar Asis, Ella Zimermann, Haim Rozenberg, Anat Bashan, Shashi Bhushan and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

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  5. High-resolution reconstruction of aRNA (New York, N.Y.) · 2024
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  18. The Peptidyl Transferase Center: a Window to the Past.Microbiology and molecular biology reviews : MMBR · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 4 countries.

Donna MatzovDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Masato TaokaDepartment of Chemistry, Graduate School of Science, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji-shi, Tokyo 192-0397, Japan.
Yuko NobeDepartment of Chemistry, Graduate School of Science, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji-shi, Tokyo 192-0397, Japan.
Yoshio YamauchiDepartment of Chemistry, Graduate School of Science, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji-shi, Tokyo 192-0397, Japan.
Yehuda HalfonDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Nofar AsisDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Ella ZimermannDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Haim RozenbergDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Anat BashanDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Shashi BhushanSchool of Biological Sciences, Nanyang Technological University, Singapore.
Toshiaki IsobeDepartment of Chemistry, Graduate School of Science, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji-shi, Tokyo 192-0397, Japan.
Michael W GrayDepartment of Biochemistry and Molecular Biology and Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, Nova Scotia, Canada B3H 1X5.
Ada YonathDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Moran Shalev-BenamiDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Weizmann Institute of Science · ILTokyo Metropolitan University · JPDalhousie University · CANanyang Technological University · SG

Funding

CIHR MOP-11212
6 · The paper itself

Abstract

Ribosomal RNA is the central component of the ribosome, mediating its functional and architectural properties. Here, we report the cryo-EM structure of a highly divergent cytoplasmic ribosome from the single-celled eukaryotic alga Euglena gracilis. The Euglena large ribosomal subunit is distinct in that it contains 14 discrete rRNA fragments that are assembled non-covalently into the canonical ribosome structure. The rRNA is substantially enriched in post-transcriptional modifications that are spread far beyond the catalytic RNA core, contributing to the stabilization of this highly fragmented ribosome species. A unique cluster of five adenosine base methylations is found in an expansion segment adjacent to the protein exit tunnel, such that it is positioned for interaction with the nascent peptide. As well as featuring distinctive rRNA expansion segments, the Euglena ribosome contains four novel ribosomal proteins, localized to the ribosome surface, three of which do not have orthologs in other eukaryotes.

Indexed as

Cryoelectron MicroscopyCytoplasmEuglena gracilisModels, MolecularRibosomal ProteinsRibosomesRNA Processing, Post-TranscriptionalRNA, RibosomalRibosomal ProteinsRNA, Ribosomal

Identifiers

PMID33091122
PMCPMC7672448
OpenAlexW3093727526

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.