Evidence map›Paper›PMID 33090988›Full record

ArticlePLoS biology2020

Interphase-arrested Drosophila embryos activate zygotic gene expression and initiate mid-blastula transition events at a low nuclear-cytoplasmic ratio.

Isaac J T Strong, Xiaoyun Lei, Fang Chen, Kai Yuan, Patrick H O'Farrell

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Regulation of zygotic genome activation by the nucleocytoplasmic ratio.Frontiers in cell and developmental biology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Collective effects of cell cleavage dynamics.Frontiers in cell and developmental biology · 2024
    Review
  11. Review
  12. Principles of genome activation in the early embryo.Current opinion in genetics & development · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Versatile roles for histones in early development.Current opinion in cell biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Isaac J T StrongDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America.
Xiaoyun LeiHunan Key Laboratory of Molecular Precision Medicine, Department of Oncology, Xiangya Hospital, Central South University, Changsha, Hunan, China.
Fang ChenHunan Key Laboratory of Molecular Precision Medicine, Department of Oncology, Xiangya Hospital, Central South University, Changsha, Hunan, China.
Kai YuanHunan Key Laboratory of Molecular Precision Medicine, Department of Oncology, Xiangya Hospital, Central South University, Changsha, Hunan, China.ORCID 0000-0001-7002-5703
Patrick H O'FarrellDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0003-0011-2734
Central South University · CNUniversity of California, San Francisco · US

Funding

PREDOCTORAL TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007470 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Todd Nystul · 1994 to 2026
$7.7M
Developmental Programs of Cell Cycle ControlR37GM037193 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI O'FARRELL, PATRICK H · 2010 to 2019
$4.8M
Embryonic Emergence of Heterochromatin and Nuclear Supervision of Mitochondrial GeneticsR35GM136324 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI O'FARRELL, PATRICK H · 2020 to 2024
$4.1M
NICHD NIH HHS T32 HD007470NIGMS NIH HHS R35 GM136324NIGMS NIH HHS R37 GM037193
6 · The paper itself

Abstract

Externally deposited eggs begin development with an immense cytoplasm and a single overwhelmed nucleus. Rapid mitotic cycles restore normality as the ratio of nuclei to cytoplasm (N/C) increases. A threshold N/C has been widely proposed to activate zygotic genome transcription and onset of morphogenesis at the mid-blastula transition (MBT). To test whether a threshold N/C is required for these events, we blocked N/C increase by down-regulating cyclin/Cdk1 to arrest early cell cycles in Drosophila. Embryos that were arrested two cell cycles prior to the normal MBT activated widespread transcription of the zygotic genome including genes previously described as N/C dependent. Zygotic transcription of these genes largely retained features of their regulation in space and time. Furthermore, zygotically regulated post-MBT events such as cellularization and gastrulation movements occurred in these cell cycle-arrested embryos. These results are not compatible with models suggesting that these MBT events are directly coupled to N/C. Cyclin/Cdk1 activity normally declines in tight association with increasing N/C and is regulated by N/C. By experimentally promoting the decrease in cyclin/Cdk1, we uncoupled MBT from N/C increase, arguing that N/C-guided down-regulation of cyclin/Cdk1 is sufficient for genome activation and MBT.

Indexed as

Cell Cycle CheckpointsGene Expression Regulation, DevelopmentalInterphaseAnimalsBlastulaCell Cycle ProteinsCell NucleusDrosophila melanogasterEmbryo, NonmammalianGastrulationRNA, MessengerTranscription, GeneticTranscriptomeZygoteCell Cycle ProteinsRNA, Messenger

Identifiers

PMID33090988
PMCPMC7608951
OpenAlexW3093531852

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.