Evidence map›Paper›PMID 33089419›Full record

ReviewFunctional & integrative genomics2020

Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement.

Gaurav Agarwal, Himabindu Kudapa, Abirami Ramalingam, Divya Choudhary, Pallavi Sinha, Vanika Garg, Vikas K Singh, Gunvant B Patil, Manish K Pandey, Henry T Nguyen and 4 more

Abstract readReview
PubMed Publisher
In one paragraph

Review in Functional & integrative genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Review
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  9. Article
  10. Insights into the Epigenetic Basis of Plant Salt Tolerance.International journal of molecular sciences · 2024
    Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. MeRIP-Seq for Identifying Stress-Responsive Transcriptome-Wide mMethods in molecular biology (Clifton, N.J.) · 2024
    Article
  18. Review
  19. Review
  20. Epigenetic Changes Occurring in Plant Inbreeding.International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Gaurav AgarwalCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India.
Himabindu KudapaCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India.
Abirami RamalingamBiosecurity Centre of Excellence, Lilydale Lakeside Campus, Box Hill Institute, Lilydale, Australia.
Divya ChoudharyDepartment of Plant Pathology, University of Georgia, Tifton, GA, USA.
Pallavi SinhaCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India.
Vanika GargCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India.
Vikas K SinghInternational Rice Research Institute (IRRI), IRRI South Asia Hub, ICRISAT, Hyderabad, Telangana, India.
Gunvant B PatilDepartment of Plant and Soil Science, Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, TX, USA.
Manish K PandeyCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India.
Henry T NguyenDivision of Plant Science, University of Missouri, Columbia, MO, USA.
Baozhu GuoDepartment of Plant Pathology, University of Georgia, Tifton, GA, USA.
Ramanjulu SunkarDepartment of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK, USA. ramanjulu.sunkar@okstate.edu.
Chad E NiederhuthDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA. niederhu@msu.edu.
Rajeev K VarshneyCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India. r.k.varshney@cgiar.org.ORCID http://orcid.org/0000-0002-4562-9131

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetics is defined as changes in gene expression that are not associated with changes in DNA sequence but due to the result of methylation of DNA and post-translational modifications to the histones. These epigenetic modifications are known to regulate gene expression by bringing changes in the chromatin state, which underlies plant development and shapes phenotypic plasticity in responses to the environment and internal cues. This review articulates the role of histone modifications and DNA methylation in modulating biotic and abiotic stresses, as well as crop improvement. It also highlights the possibility of engineering epigenomes and epigenome-based predictive models for improving agronomic traits.

Indexed as

Plant BreedingChromatinCrops, AgriculturalDNA MethylationEpigenomicsGene Expression Regulation, PlantHistone CodeHistonesPlant DevelopmentPlantsProtein Processing, Post-TranslationalChromatinHistonesDNA methylationEpigenetic inheritanceEpigenome engineeringEpiRILsHistone modifications

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.