Evidence map›Paper›PMID 33089114›Full record

ArticleiScience2020

A Qualitative Change in the Transcriptome Occurs after the First Cell Cycle and Coincides with Lumen Establishment during MDCKII Cystogenesis.

Tianfang Wang, Sang-Ho Kwon, Xiao Peng, Severine Urdy, Zefu Lu, Robert J Schmitz, Stephen Dalton, Keith E Mostov, Shaying Zhao

Open access · goldAbstract read
In one paragraph

Article in iScience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Tianfang WangDepartment of Biochemistry and Molecular Biology, Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.
Sang-Ho KwonDepartment of Anatomy, University of California, San Francisco, CA 94143-2140, USA.
Xiao PengDepartment of Anatomy, University of California, San Francisco, CA 94143-2140, USA.
Severine UrdyDepartment of Anatomy, University of California, San Francisco, CA 94143-2140, USA.
Zefu LuDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.
Robert J SchmitzDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.
Stephen DaltonDepartment of Biochemistry and Molecular Biology, Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.
Keith E MostovDepartment of Anatomy, University of California, San Francisco, CA 94143-2140, USA.
Shaying ZhaoDepartment of Biochemistry and Molecular Biology, Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.
University of Georgia · USUniversity of California, San Francisco · US

Funding

Regulation of exosome release and its role in acute kidney injury.R01DK120510 · NIDDK · AUGUSTA UNIVERSITY · PI KWON, KENNETH · 2019 to 2023
$1.7M
Control of Epithelial PolarityR01DK091530 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MOSTOV, KEITH E · 2011 to 2015
$1.7M
Man's Best Friend for Driver-Passenger DistinctionR01CA182093 · NCI · UNIVERSITY OF GEORGIA · PI ZHAO, SHAYING · 2014 to 2018
$1.6M
NCI NIH HHS R01 CA182093NIDDK NIH HHS R01 DK091530NIDDK NIH HHS R01 DK120510
6 · The paper itself

Abstract

Madin-Darby canine kidney II (MDCKII) cells are widely used to study epithelial morphogenesis. To better understand this process, we performed time course RNA-seq analysis of MDCKII 3D cystogenesis, along with polarized 2D cells for comparison. Our study reveals a biphasic change in the transcriptome that occurs after the first cell cycle and coincides with lumen establishment. This change appears to be linked to translocation of β-catenin, supported by analyses with

Indexed as

Developmental BiologyEmbryologyTranscriptomics

Identifiers

PMID33089114
PMCPMC7567049
OpenAlexW3091253123

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.