Evidence map›Paper›PMID 33086808›Full record

ArticleThe Journal of chemical physics2020

Extrapolation and interpolation strategies for efficiently estimating structural observables as a function of temperature and density.

Jacob I Monroe, Harold W Hatch, Nathan A Mahynski, M Scott Shell, Vincent K Shen

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Article in The Journal of chemical physics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Bottom-up Coarse-Graining: Principles and Perspectives.Journal of chemical theory and computation · 2022
    Review
  4. Article
  5. Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jacob I MonroeNational Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA.ORCID 0000000276542856
Harold W HatchNational Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA.ORCID 0000000329269145
Nathan A MahynskiNational Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA.ORCID 0000000200088749
M Scott ShellUniversity of California - Santa Barbara, Santa Barbara, California 93106, USA.ORCID 0000000204391534
Vincent K ShenNational Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA.

Funding

Intramural NIST DOC 9999-NIST
6 · The paper itself

Abstract

Thermodynamic extrapolation has previously been used to predict arbitrary structural observables in molecular simulations at temperatures (or relative chemical potentials in open-system mixtures) different from those at which the simulation was performed. This greatly reduces the computational cost in mapping out phase and structural transitions. In this work, we explore the limitations and accuracy of thermodynamic extrapolation applied to water, where qualitative shifts from anomalous to simple-fluid-like behavior are manifested through shifts in the liquid structure that occur as a function of both temperature and density. We present formulas for extrapolating in volume for canonical ensembles and demonstrate that linear extrapolations of water's structural properties are only accurate over a limited density range. On the other hand, linear extrapolation in temperature can be accurate across the entire liquid state. We contrast these extrapolations with classical perturbation theory techniques, which are more conservative and slowly converging. Indeed, we show that such behavior is expected by demonstrating exact relationships between extrapolation of free energies and well-known techniques to predict free energy differences. An ideal gas in an external field is also studied to more clearly explain these results for a toy system with fully analytical solutions. We also present a recursive interpolation strategy for predicting arbitrary structural properties of molecular fluids over a predefined range of state conditions, demonstrating its success in mapping qualitative shifts in water structure with density.

Identifiers

PMID33086808
PMCPMC8061533

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